PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02440.4
Common NameLOC4351327
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 265aa    MW: 29636.1 Da    PI: 8.236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02440.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.3e-19106170259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LOC_Os12g02440.4 106 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 170
                       8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-2291170IPR003657WRKY domain
PROSITE profilePS5081114.665100147IPR003657WRKY domain
SuperFamilySSF1182901.14E-19101170IPR003657WRKY domain
SMARTSM007741.2E-28105171IPR003657WRKY domain
PfamPF031067.9E-22106170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MARRRVSAGA ASTPIHQIGI QGRTTKQALH GCSVVIKSST SVVGPYAWVR SGGGRNKLSV  60
LTIGKRKGDK HIMDNHNLEE EAKESVSKRR KNAEHTGSTV AQAPHNDGHQ WRKYGQKWIS  120
RAKHSRSYYR CANSKVQGCP ATKTVQQMDS SGNGTSKLFN VDYYGQHTCR GDGIANPYVV  180
DTAHHSMEPI NQNECNSPTL EHEAHEVQDE RFENLCMVQN MPEYLIDFEL ERAFEFIVNS  240
PLGSEHWTFD DSIRCEHSPI CIWG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1006660.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYJ7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02440.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8343140.0CT834314.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620024.10.0probable WRKY transcription factor 46 isoform X3
TrEMBLQ2QYJ70.0Q2QYJ7_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGONIVA11G01050.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Representative plantOGRP1240236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-16WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]