PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02440.3
Common NameOs12g0116600, OSNPB_120116600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 218aa    MW: 24736.4 Da    PI: 6.4401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02440.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.56.5e-1959123259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LOC_Os12g02440.3  59 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 123
                       8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-2244123IPR003657WRKY domain
PROSITE profilePS5081114.66553100IPR003657WRKY domain
SuperFamilySSF1182907.72E-2054123IPR003657WRKY domain
SMARTSM007741.2E-2858124IPR003657WRKY domain
PfamPF031065.4E-2259123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLELGGDTNK LTNLVGGKRK GDKHIMDNHN LEEEAKESVS KRRKNAEHTG STVAQAPHND  60
GHQWRKYGQK WISRAKHSRS YYRCANSKVQ GCPATKTVQQ MDSSGNGTSK LFNVDYYGQH  120
TCRGDGIANP YVVDTAHHSM EPINQNECNS PTLEHEAHEV QDERFENLCM VQNMPEYLID  180
FELERAFEFI VNSPLGSEHW TFDDSIRCEH SPICIWG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.148820.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154870150.0
Expression AtlasA0A0P0Y678-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02440.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620022.11e-165probable WRKY transcription factor 46 isoform X1
RefseqXP_015620023.11e-165probable WRKY transcription factor 46 isoform X2
TrEMBLA0A0P0Y6781e-165A0A0P0Y678_ORYSJ; Os12g0116600 protein (Fragment)
STRINGOS12T0116600-011e-165(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-17WRKY DNA-binding protein 46