PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02440.2
Common NameLOC4351327
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 264aa    MW: 29507.9 Da    PI: 8.236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02440.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.3e-19105169259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LOC_Os12g02440.2 105 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 169
                       8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-2290169IPR003657WRKY domain
PROSITE profilePS5081114.66599146IPR003657WRKY domain
SuperFamilySSF1182901.14E-19100169IPR003657WRKY domain
SMARTSM007741.2E-28104170IPR003657WRKY domain
PfamPF031067.8E-22105169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MARRRVSAGA ASTPIHQIGI QGRTTKALHG CSVVIKSSTS VVGPYAWVRS GGGRNKLSVL  60
TIGKRKGDKH IMDNHNLEEE AKESVSKRRK NAEHTGSTVA QAPHNDGHQW RKYGQKWISR  120
AKHSRSYYRC ANSKVQGCPA TKTVQQMDSS GNGTSKLFNV DYYGQHTCRG DGIANPYVVD  180
TAHHSMEPIN QNECNSPTLE HEAHEVQDER FENLCMVQNM PEYLIDFELE RAFEFIVNSP  240
LGSEHWTFDD SIRCEHSPIC IWG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1006660.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYJ7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02440.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8343140.0CT834314.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620025.10.0probable WRKY transcription factor 46 isoform X4
TrEMBLQ2QYJ70.0Q2QYJ7_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGONIVA11G01050.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-16WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]