PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g02420.2 | ||||||||
Common Name | LOC9269857, Os12g0116400, OSNPB_120116400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 25076.8 Da PI: 8.6617 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.1 | 1.5e-22 | 42 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ LOC_Os12g02420.2 42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 103 8***************************99999*******8761679*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-24 | 29 | 103 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-23 | 33 | 104 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.996 | 36 | 105 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-33 | 41 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-25 | 42 | 102 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MALDSVPSYP SDLGSSRART PQQQRVRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF 60 PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSPKIVG STPDSTVQSR 120 KAISICFNSH GKTGELPTFL SPSASLLSPS MQPYSSNQQP DMNTYSRQFH WADTSSSTSY 180 APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIEYFH FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-16 | 42 | 102 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.47146 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QYK0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g02420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g02420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832018 | 0.0 | CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620027.1 | 1e-166 | probable WRKY transcription factor 29 isoform X2 | ||||
TrEMBL | Q2QYK0 | 1e-165 | Q2QYK0_ORYSJ; Os12g0116400 protein | ||||
STRING | OS12T0116400-00 | 1e-166 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-21 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g02420.2 |
Entrez Gene | 9269857 |
Publications ? help Back to Top | |||
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