PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g02420.1

Common Name

LOC9269857, OsJ_35006

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 225aa MW: 25260.9 Da PI: 8.6617

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g02420.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.1	1.5e-22	44	105	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ LOC_Os12g02420.1 44 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 105 8*************************99999***8761679***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-24	31	105	IPR003657	WRKY domain
SuperFamily	SSF118290	8.24E-23	35	106	IPR003657	WRKY domain
PROSITE profile	PS50811	15.996	38	107	IPR003657	WRKY domain
SMART	SM00774	2.2E-33	43	106	IPR003657	WRKY domain
Pfam	PF03106	4.5E-25	44	104	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MALDSVPSYP SDLGSSRART PQQQRVSPRK EERTWTTDTY APYDDGHQWR KYGEKKLSNS 60 NFPRFYYRCT YKNDMKCPAT KQVQQKDTND PPLFSVTYFN HHTCNSSPKI VGSTPDSTVQ 120 SRKAISICFN SHGKTGELPT FLSPSASLLS PSMQPYSSNQ QPDMNTYSRQ FHWADTSSST 180 SYAPVKMEAD DYAEASASPS TTGALSRTLL PIGQSRCIEY FHFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-16	44	104	9	68	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.47146	0.0	callus\| leaf\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QYJ9

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g02420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g02420

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073243	0.0	AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620026.1	1e-168	probable WRKY transcription factor 29 isoform X1
TrEMBL	A0A0E0RCX5	1e-166	A0A0E0RCX5_ORYRU; Uncharacterized protein
TrEMBL	I1R3G7	1e-166	I1R3G7_ORYGL; Uncharacterized protein
TrEMBL	Q2QYJ9	1e-166	Q2QYJ9_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRING	ORUFI12G01160.1	1e-167	(Oryza rufipogon)
STRING	ORGLA12G0007300.1	1e-167	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2032	35	100
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	3e-22	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	LOC_Os12g02420.1
Entrez Gene	9269857

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]