PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02090.1
Common NameLOC107279613, OsJ_34983
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 142aa    MW: 15472.8 Da    PI: 11.8614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.82.5e-27151272116
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaess 78 
                       ag kd+hsk+ T++g+RdR vRls++ a+ f+d+qd+LG+d++sk+ieW +++a +ai++  ++                            +
  LOC_Os12g02090.1  15 AGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHIRAAAAAIDAFLSLdcslvlpnaaqlltrwR-----------R 96 
                       789*************************************************************77665544433333331...........3 PP

               TCP  79 sssasnsssgkaaksaakskksqksaasalnlakesra 116
                       + s++++s+++a++ +a+   s++++        ++r 
  LOC_Os12g02090.1  97 RPSSGQPSEEQARTRKATVAASPRKSG-------KKRR 127
                       333332222222222221111111111.......1111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-2816128IPR005333Transcription factor, TCP
PROSITE profilePS5136927.2721775IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAAAWRTSRV ACVVAGEKDK HSKVVTSRGL RDRCVRLSVP MAIAFYDIQD RLGVDQPSKA  60
IEWHIRAAAA AIDAFLSLDC SLVLPNAAQL LTRWRRRPSS GQPSEEQART RKATVAASPR  120
KSGKKRRKTR SGCAARSASR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-182273152Putative transcription factor PCF6
5zkt_B6e-182273152Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.794591e-156callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYN5
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005100.0BX000510.1 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619107.11e-96transcription factor PCF8-like
SwissprotA2ZMR94e-37PCF8_ORYSI; Transcription factor PCF8
TrEMBLQ2QYN52e-95Q2QYN5_ORYSJ; TCP family transcription factor containing protein
STRINGORUFI12G00880.11e-94(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-18TCP family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]