PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g02090.1 | ||||||||
Common Name | LOC107279613, OsJ_34983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 142aa MW: 15472.8 Da PI: 11.8614 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.8 | 2.5e-27 | 15 | 127 | 2 | 116 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaess 78 ag kd+hsk+ T++g+RdR vRls++ a+ f+d+qd+LG+d++sk+ieW +++a +ai++ ++ + LOC_Os12g02090.1 15 AGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHIRAAAAAIDAFLSLdcslvlpnaaqlltrwR-----------R 96 789*************************************************************77665544433333331...........3 PP TCP 79 sssasnsssgkaaksaakskksqksaasalnlakesra 116 + s++++s+++a++ +a+ s++++ ++r LOC_Os12g02090.1 97 RPSSGQPSEEQARTRKATVAASPRKSG-------KKRR 127 333332222222222221111111111.......1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-28 | 16 | 128 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.272 | 17 | 75 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MAAAWRTSRV ACVVAGEKDK HSKVVTSRGL RDRCVRLSVP MAIAFYDIQD RLGVDQPSKA 60 IEWHIRAAAA AIDAFLSLDC SLVLPNAAQL LTRWRRRPSS GQPSEEQART RKATVAASPR 120 KSGKKRRKTR SGCAARSASR S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 22 | 73 | 1 | 52 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 22 | 73 | 1 | 52 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 127 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.79459 | 1e-156 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QYN5 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g02090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g02090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000510 | 0.0 | BX000510.1 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619107.1 | 1e-96 | transcription factor PCF8-like | ||||
Swissprot | A2ZMR9 | 4e-37 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | Q2QYN5 | 2e-95 | Q2QYN5_ORYSJ; TCP family transcription factor containing protein | ||||
STRING | ORUFI12G00880.1 | 1e-94 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 5e-18 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g02090.1 |
Entrez Gene | 107279613 |
Publications ? help Back to Top | |||
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