PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g48000.1 | ||||||||
Common Name | LOC9271775, Os11g0707300, OsJ_34883, OSNPB_110707300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 27177 Da PI: 7.2211 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H LOC_Os11g48000.1 53 YTCSFCQREFRSAQALGGHMNVH 75 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.66E-6 | 50 | 79 | No hit | No description |
PROSITE profile | PS50157 | 11.261 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-5 | 53 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0031 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEEQRGEEEW VMWGSAGRRR IIRQSASWEE QAFARDAAAN ANLGGCVWPP RFYTCSFCQR 60 EFRSAQALGG HMNVHRRDRA RLRQRQTSSS SSPSHQEEEA EAPQDQQAGP YYTSFSKPST 120 TSTDNTTCSN DILLLARDQE TIKKRVPRQQ VQVVADQDED EPAGRRYKRR RLGLVDQLPS 180 SCEGGDHHHQ VLIITPTTAA ASPSSIIASA SALVVGDQQH QQAGSVLDLE LRLGTSTPPK 240 AVVHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 48 | 75 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 48 | 75 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 23 | GRRRIIRQ |
2 | 167 | 171 | KRRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98587 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53NV6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g48000.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g48000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133008 | 0.0 | AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615827.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0D3HQB1 | 0.0 | A0A0D3HQB1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0J5L6 | 0.0 | A0A0E0J5L6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2ZH37 | 0.0 | A2ZH37_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q53NV6 | 0.0 | Q53NV6_ORYSJ; Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From Arabidopsis Thaliana Superman Protein | ||||
STRING | OS11T0707300-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA11G23290.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART11G23770.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17490 | 11 | 11 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g48000.1 |
Entrez Gene | 9271775 |
Publications ? help Back to Top | |||
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