PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g47870.1 | ||||||||
Common Name | LOC4351217, Os11g0705200, OsJ_34870, OSNPB_110705200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 693aa MW: 77442.3 Da PI: 4.7832 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.1 | 3.6e-107 | 304 | 682 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL++cA+av+++d + a++lL+++++++s +gd++qRla +f+e+L+arla+++s++yk+l ++ ts +++ l+a+klf ++ i k+s LOC_Os11g47870.1 304 HTLLIHCAQAVATSDRRSATELLKQIKQNSSARGDATQRLACCFAEGLEARLAGTGSQVYKSLVAKCTS---TVDFLKAYKLFAAACCIKKVS 393 679**************************************************************9999...8******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 ++ N++Il+av+g++++Hi+D+++s+G+QWp L++ L++R++gpp++RiTg++ p++g ++++eetg+rL++ A+++gvpf+f++ +a + LOC_Os11g47870.1 394 FIFSNKTILDAVAGKRKLHIVDYGLSYGFQWPGLFKCLSEREGGPPEVRITGIDFPQPGfrPADQIEETGRRLSNCARQFGVPFRFQA-IAAK 485 **********************************************************9*****************************.799* PP GRAS 186 ledleleeLrvkp.......gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +e+++ e+L++++ +E+l+Vn+ + l l desv ++s +rd vL+ +++++P+v+v + + ++++ Fl+rf e+l +ys+ fd LOC_Os11g47870.1 486 WETVRREDLHLDReeeeeeeEEVLVVNCLHFLNALQDESVVVDSpsPRDMVLNNIRDMRPHVFVQCVVNGAYGAPFFLTRFRETLFFYSSQFD 578 *********9999999999999*****************98888779********************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +l+a++pr+++er +Er +lgr++ nv+acega+r+ r et+++W r ++aG++++pl+ ++++ ++ ++k + + + ++ ++++l++gW LOC_Os11g47870.1 579 MLDATIPRDNDERLLIERDILGRWALNVIACEGADRVDRPETYKQWLVRNHRAGLTQLPLQPQVVELVRDKVKKLYHKDFVIDVDHNWLLQGW 671 ****************************************************************************888************** PP GRAS 363 kdrpLvsvSaW 373 k+r L+++S W LOC_Os11g47870.1 672 KGRILYAMSTW 682 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.806 | 277 | 663 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-104 | 304 | 682 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MAAAAPQLEE LVDLEPFSPS LFLDLPPTPH SDDPNDDDLI LPFISRMLME DDIDDKFFYQ 60 FPDHPALLHA QQPYAQILDA PSDDTTTNSS DDSASATTNN TTNSAAAANA SWPYDPIELS 120 QLLQSPPHPV SDNHDADVGD TRSAPEDDKD LKLLFSAADN MEMLNMAFLK GREEANKLVP 180 TNNTLFAGFD GASLLKTEPA VDEPTLMFGR SGGSGRGRKN RHGEEDDLEA ETGRSSKLMV 240 PPQEATAAAS EMFDEIMFNW YEVIMKGMEE LRVAMDSEAE KKARNGGGAG RRAARAKAAV 300 VDLHTLLIHC AQAVATSDRR SATELLKQIK QNSSARGDAT QRLACCFAEG LEARLAGTGS 360 QVYKSLVAKC TSTVDFLKAY KLFAAACCIK KVSFIFSNKT ILDAVAGKRK LHIVDYGLSY 420 GFQWPGLFKC LSEREGGPPE VRITGIDFPQ PGFRPADQIE ETGRRLSNCA RQFGVPFRFQ 480 AIAAKWETVR REDLHLDREE EEEEEEEVLV VNCLHFLNAL QDESVVVDSP SPRDMVLNNI 540 RDMRPHVFVQ CVVNGAYGAP FFLTRFRETL FFYSSQFDML DATIPRDNDE RLLIERDILG 600 RWALNVIACE GADRVDRPET YKQWLVRNHR AGLTQLPLQP QVVELVRDKV KKLYHKDFVI 660 DVDHNWLLQG WKGRILYAMS TWVADRDHKS LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-39 | 309 | 683 | 25 | 379 | Protein SCARECROW |
5b3h_A | 5e-39 | 309 | 683 | 24 | 378 | Protein SCARECROW |
5b3h_D | 5e-39 | 309 | 683 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87832 | 0.0 | callus| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987408 | 0.0 | ||||
Expression Atlas | Q53MB0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g47870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g47870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 0.0 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617900.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | Q53MB0 | 0.0 | Q53MB0_ORYSJ; GRAS family transcription factor containing protein, expressed | ||||
STRING | OS11T0705200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-138 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g47870.1 |
Entrez Gene | 4351217 |
Publications ? help Back to Top | |||
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