PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os11g47630.1 | ||||||||
Common Name | LOC4351199, Os11g0702400, OsJ_34843, OSNPB_110702400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18029.5 Da PI: 10.677 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++Fs+ L H +H LOC_Os11g47630.1 45 FQCRTCGRRFSTFQALGGHRTSH 67 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 18.4 | 5.9e-06 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F + L H+r+H LOC_Os11g47630.1 99 HRCDMCGKVFATGQALGGHMRRH 121 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 37 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.2E-10 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.07E-9 | 45 | 67 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.07E-9 | 94 | 121 | No hit | No description |
Pfam | PF13912 | 3.0E-12 | 98 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 99 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.471 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MEVATNTATR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL 60 GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGASTPVVHR CDMCGKVFAT GQALGGHMRR 120 HRPLVSRNGT MSTTWTAAAA AAATMSGSSS EERDDDDDDD VHNYNFIHFL * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.15874 | 0.0 | callus| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32990435 | 0.0 | ||||
Expression Atlas | Q53NL6 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os11g47630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os11g47630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 0.0 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK062491 | 0.0 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. | |||
GenBank | AK105226 | 0.0 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616529.1 | 1e-122 | zinc finger protein ZAT8 | ||||
TrEMBL | Q53NL6 | 1e-120 | Q53NL6_ORYSJ; Os11g0702400 protein | ||||
STRING | OS11T0702400-01 | 1e-121 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53600.1 | 2e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os11g47630.1 |
Entrez Gene | 4351199 |
Publications ? help Back to Top | |||
---|---|---|---|
|