PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g47620.1 | ||||||||
Common Name | LOC9269083, Os11g0702300, OSNPB_110702300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18233.3 Da PI: 5.8787 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F+++ L H +H LOC_Os11g47620.1 71 FECRTCGRRFPSHQALGGHRTSH 93 89*************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.1E-10 | 70 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-7 | 71 | 133 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-9 | 111 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDQQEDYTSD LQLELEEEED DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR 60 RRDEEAAAAA FECRTCGRRF PSHQALGGHR TSHLRPTTNK RRPGPSKPLI HACEVCGLGF 120 QMGQALGGHM RRHRPRNIDL GHKQIVMPEI RPSSSLQLLD LFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.94347 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53NL7 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g47620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g47620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 0.0 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK243307 | 0.0 | AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616383.1 | 1e-117 | zinc finger protein ZAT1 | ||||
TrEMBL | Q53NL7 | 1e-115 | Q53NL7_ORYSJ; Os11g0702300 protein | ||||
STRING | OS11T0702300-00 | 1e-116 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g47620.1 |
Entrez Gene | 9269083 |
Publications ? help Back to Top | |||
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