PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g47460.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19530.2 Da PI: 6.9103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ LOC_Os11g47460.3 2 SPKEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 899***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.83E-11 | 1 | 43 | No hit | No description |
SMART | SM00717 | 9.7E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.29 | 1 | 47 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSPKEEHLII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER RGDMSPSSSS 60 SSLVYQSCLL DTVPIISMDG GDIHDDRSCM ARVLKSTQSV MDGYTMDQIW KEIEAPGAPS 120 LLGIDEGKDK ACSNLPCPLL TSTMSDYSCP EVFWKIDNEE TRMLATQSGY GK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10174 | 0.0 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | F4MGF7 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g47460.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g47460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111626 | 0.0 | AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence. | |||
GenBank | DQ075258 | 0.0 | DQ075258.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-1 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075259 | 0.0 | DQ075259.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-2 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075260 | 0.0 | DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617959.1 | 1e-125 | myb-related protein MYBAS1 isoform X2 | ||||
Refseq | XP_025877324.1 | 1e-125 | myb-related protein MYBAS1 isoform X1 | ||||
Swissprot | Q53NK6 | 1e-126 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | F4MGF7 | 1e-125 | F4MGF7_ORYSJ; Myb family transcription factor, putative, expressed | ||||
STRING | ORUFI11G25190.1 | 1e-125 | (Oryza rufipogon) | ||||
STRING | OS11T0700500-01 | 1e-125 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 4e-33 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g47460.3 |
Publications ? help Back to Top | |||
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