PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g45850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 28953.2 Da PI: 7.9234 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71 | 1.7e-22 | 36 | 98 | 2 | 58 |
--SS-EEEEEEE--TT-SS-E...EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefpr...sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++WrKYGqK+v+g+ +p +Y+rC+++ gC+++kkv+r++ dp +v+++Y+g H + LOC_Os11g45850.1 36 DDGFSWRKYGQKDVEGAMHPTtqsNYFRCAHKmttGCKARKKVQRTDGDPLMVDVVYKGVHSC 98 8****************99963337******9999**************************98 PP | |||||||
2 | WRKY | 68.7 | 8.7e-22 | 136 | 196 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+W++YGqK++ g+++pr YYrC ++ gC+++k+ + ++ dp +++++Y+geH+++ LOC_Os11g45850.1 136 DDGYSWKRYGQKNIFGANYPRCYYRCIHKtttGCTATKNAQATDGDPLLFDVVYHGEHTCD 196 8*************************877777***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-22 | 30 | 99 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-20 | 33 | 98 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-32 | 35 | 100 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.385 | 36 | 97 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-21 | 36 | 98 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-24 | 124 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.461 | 130 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-22 | 131 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-31 | 135 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-22 | 136 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGVLKVGAYI NLCILHNRKE PQMERRKVIR MSYTEDDGFS WRKYGQKDVE GAMHPTTQSN 60 YFRCAHKMTT GCKARKKVQR TDGDPLMVDV VYKGVHSCAG VHSDSQRSSA ASSKSNLRPT 120 KSMQVRASSK DVGPPDDGYS WKRYGQKNIF GANYPRCYYR CIHKTTTGCT ATKNAQATDG 180 DPLLFDVVYH GEHTCDLQST HSNDVEPIRP QSGLDDDMCT DDTTTVSTRH DSNTDASSIS 240 FQLDWTNCKD ESDGPPTTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-14 | 36 | 195 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.73835 | 1e-178 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QZI7 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g45850.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g45850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135644 | 1e-176 | AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence. | |||
GenBank | AP014967 | 1e-176 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-176 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616376.2 | 1e-116 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 2e-21 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | Q2QZI7 | 0.0 | Q2QZI7_ORYSJ; WRKY DNA binding domain containing protein, expressed | ||||
STRING | ORGLA11G0184200.1 | 1e-149 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP30953 | 3 | 4 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 8e-23 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g45850.1 |