PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g45740.1 | ||||||||
Common Name | LOC4351131, Os11g0684000, OSNPB_110684000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32783.4 Da PI: 5.801 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l++++ +G g+W++ ar g++Rt+k+c++rw++yl LOC_Os11g45740.1 31 RGPWTVDEDLTLINYISDHGEGRWNALARAAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ LOC_Os11g45740.1 84 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 127 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.194 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-30 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.88E-10 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 24.451 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 84 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-11 | 86 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 86 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLINYISDHG EGRWNALARA 60 AGLKRTGKSC RLRWLNYLRP DVKRGNFTAE EQLLILDLHS RWGNRWSKIA QHLPGRTDNE 120 IKNYWRTRVQ KHAKQLNCDV NSKRFKDAMK YLWMPRLAER IHARAGAVDD SGDYSNNDLS 180 CVSGVTMATV ANCFDGSPSM VTSSSSDSFT SESQDLKKIN LHVHGDDEKM NSEDWMQEVD 240 HEFWSTEIQP NNEQFQDQQL NGWVQGFSEG LSETLWSLED IWKMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 23 | 131 | 19 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.96736 | 0.0 | leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QZJ8 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g45740.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g45740 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY026332 | 0.0 | AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618000.1 | 0.0 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 0.0 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A0E0RC24 | 0.0 | A0A0E0RC24_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G24630.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS11T0684000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-80 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g45740.1 |
Entrez Gene | 4351131 |