PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g45530.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 795aa    MW: 92498 Da    PI: 8.4152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g45530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.81.7e-13461211090
              FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        GF v k+ skk+ ++g++   t+ Cs++gk++ ++++   + +++++tr +C ak++  ++ d+k+++++l l+HnH ++
  LOC_Os11g45530.1  46 KGFGVIKRGSKKT-EDGKVRYFTLACSRQGKAQYTSTN---KFKPNPSTRQQCPAKVNFYLH-DEKFCISTLTLDHNHVVS 121
                       69***99999988.8899****************9888...99******************9.9**************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1146121IPR004330FAR1 DNA binding domain
PfamPF105511.9E-38242336IPR018289MULE transposase domain
PROSITE profilePS509669.458525563IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4537558IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDTNLCSDDE QEDHIISDED GFAIEEVESD SNALVADKTK LLEPTKGFGV IKRGSKKTED  60
GKVRYFTLAC SRQGKAQYTS TNKFKPNPST RQQCPAKVNF YLHDEKFCIS TLTLDHNHVV  120
SPSKARHLRC HKKLDLQAKR RLELNDQARI RINKNFSSLV MQAGGYENLQ FGEKECRNYL  180
QDVRKLKLGA GDAHAVYQYF LRMTSKDPNF FYVMDVDEDS RLKNVLWVDA RSRATYESFS  240
DVVTFDTTYL TNKYHMPFAP FVGVNHHGES VLLGCALLSN EETETFVWLF RSWLSCMSNK  300
APNAIITDQC RAMQNAIMEV FPEARHRWCL WHIMKKIPEK LGGYLEYEVI SSTLSNVVYD  360
SLNRDDFDKG WMKMIDEFSL QDNEWLAGLY DNRELWVPAY VKDTFWAGMS SSQRSESVNA  420
FFDGYVNART TLKQFVEQYD NALRDKVEKE NKSDCKSFQE AIPCITHYEF ERQFQVAYTN  480
KKFKEFQDEL RGKIYYYATL RKTEGLVHTF SVREDRKIGE QRVVSELLVL FNQEDCDLHC  540
ECRHFEFRGI LCRHILSILP LVDIEKVPSK YILQRWRKDF KRKHTFIKCS YDDQLDTPIV  600
RRFDTLCKRF NEVAENGSVS DALCNLVMDG LNELQIKIDA HHGSKEIQEY QQNGKNKDMV  660
LKQGKMVLSP ISVRRRGRPP SLRKQSKLDQ VVRRLRMKKQ QESTIEVQSR RRRKTRTKNV  720
ISKDKQLINI QNSRQMEVNF DHCYGGAYEA GSAEFAANEF QGLQSNHPAP PSHISSYMDL  780
LQVSYKRRTH ASDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1785789KRRTH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QZM0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g45530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g45530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369980.0AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314597.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLQ2QZM00.0Q2QZM0_ORYSJ; Transposon protein, putative, unclassified
STRINGOS11T0681300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-127FAR1 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]