PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g39000.1
Common NameILI2, LOC4350872, Os11g0603000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 102aa    MW: 10995.6 Da    PI: 7.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g39000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0823631554
                      HHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                      ++ + +++L+ +lP++ ++ + K  s ae+L++A++YI+ L
  LOC_Os11g39000.1 23 QMAELISKLQAVLPTRGGEANAKqASSAEVLQEACRYIRRL 63
                      78899**********777777787***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-52363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-72366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0040008Biological Processregulation of growth
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSSRRSRTS SRLAAAPPPT DEQMAELISK LQAVLPTRGG EANAKQASSA EVLQEACRYI  60
RRLHREADAL SERLAELLLL QPSDLAINGA DVPDLIRSLL M*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2R1J3
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g39000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g39000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113031e-171AK111303.1 Oryza sativa Japonica Group cDNA clone:002-181-B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616700.16e-65transcription factor ILI2 isoform X1
SwissprotB8BLA35e-66ILI2_ORYSI; Transcription factor ILI2
SwissprotQ2R1J35e-66ILI2_ORYSJ; Transcription factor ILI2
TrEMBLI1R1H21e-63I1R1H2_ORYGL; Uncharacterized protein
STRINGOS11T0603000-012e-64(Oryza sativa)
STRINGORGLA11G0161400.12e-64(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170041112
Representative plantOGRP8216416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.17e-12bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]