PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g38870.2

Common Name

LOC4350864, Os11g0601700, OsJ_34429, OSNPB_110601700

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 269aa MW: 28932.9 Da PI: 7.8683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g38870.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	2e-05	37	83	1	51
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + + LOC_Os11g38870.2 37 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 83 678899*********************885....23444555666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.83E-4	34	91	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-8	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-11	34	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.823	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0025	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020039	anatomy	leaf lamina

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD QLNDLFVELS 60 SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE NNELQEENIM 120 LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG NGPNLAMVHP 180 TNTLSPLHNQ HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST PATSSGLTDS 240 LPGQLRLSLP QSSQEENSSG SKKGRKKG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.27243	0.0	callus\| flower\| leaf\| panicle\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32978035	0.0
Expression Atlas	Q2R1K8	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g38870.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g38870

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068017	0.0	AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617820.1	0.0	transcription factor BHLH062-like isoform X2
Refseq	XP_015617821.1	0.0	transcription factor BHLH062-like isoform X2
TrEMBL	Q2R1K8	0.0	Q2R1K8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRING	OS11T0601700-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	9e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g38870.2
Entrez Gene	4350864

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Li X, et al. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol., 2006. 141(4): p. 1167-84 [PMID:16896230]