PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g38870.1
Common NameLOC4350864, Os11g0601700, OsJ_34429, OSNPB_110601700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 279aa    MW: 30071.2 Da    PI: 8.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g38870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-054793151
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                      +++ + erE+  Rd++N+ f eL ++l +      +   Ka++L  A + +
  LOC_Os11g38870.1 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 93
                      678899*********************885....23444555666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-844116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1144110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0010744101No hitNo description
PROSITE profilePS5088810.8234696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002552102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPQVRNQNLG MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD  60
QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE  120
NNELQEENIM LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG  180
NGPNLAMVHP TNTLSPLHNQ HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST  240
PATSSGLTDS LPGQLRLSLP QSSQEENSSG SKKGRKKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272430.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329780350.0
Expression AtlasQ2R1K8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g38870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g38870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680170.0AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617819.10.0transcription factor BHLH062-like isoform X1
TrEMBLQ2R1K80.0Q2R1K8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGOS11T0601700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Representative plantOGRP1467944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-31bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Li X, et al.
    Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
    Plant Physiol., 2006. 141(4): p. 1167-84
    [PMID:16896230]