PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g32110.2 | ||||||||
Common Name | LOC4350610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 853aa MW: 93912.5 Da PI: 6.7931 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + LOC_Os11g32110.2 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 237 99*****************************7333.34459************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ LOC_Os11g32110.2 238 ENGELRVGVRRA 249 9999*****996 PP | |||||||
2 | Auxin_resp | 116.9 | 1.7e-38 | 274 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp Wp+SkWrsLk LOC_Os11g32110.2 274 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 356 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-42 | 141 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.02E-41 | 143 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.25E-22 | 146 | 248 | No hit | No description |
SMART | SM01019 | 9.9E-24 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 148 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-36 | 274 | 356 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.47E-11 | 719 | 800 | No hit | No description |
PROSITE profile | PS51745 | 21.936 | 724 | 808 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.2E-6 | 770 | 808 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MATAEVGGGG GEGDAAAAAV ARGGGGGGGG GGGEDALFTE LWSACAGPLV TVPRVGEKVF 60 YFPQGHIEQV EASTNQVGEQ RMQLYNLPWK ILCEVMNVEL KAEPDTDEVY AQLTLLPESK 120 QQEDNGSTEE EVPSAPAAGH VRPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS 180 RQPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG 240 ELRVGVRRAM RQQTNVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP 300 YDRYMESLKQ NYSIGMRFKM RFEGEEAPEQ RFTGTIVGMG DSDPAGWPES KWRSLKVRWD 360 EASSIPRPER VSPWQIEPAV SPPPVNPLPV PRTKRLRPNA TALPADSSAI AKEAATKVVV 420 ESEPNGTQRT FQTQENATPK SGFGNSSELE SAQKSIMRPS GFDREKNNTP IQWKLGSDGR 480 MQMSKPESYS EMLSGFQPPK DVQIPQGFCS LPEQITAGHS NFWHTVNAQY QDQQSNHNMF 540 PSSWSFMPPN TRLGLNKQNY SMIQEAGVLS QRPGNTKFGN GVYAALPGRG TEQYSGGWFG 600 HMMPNSHMDD TQPRLIKPKP LVVAHGDVQK AKGASCKLFG IHLDSPAKSE PLKSPSSVVY 660 DGTPQTPGAT EWRRPDVTEV EKCSDPSKAM KPLDTPQPDS VPEKPSSQQA SRNMSCKSQG 720 VSTRSCKKVH KQGIALGRSV DLTKFNGYEE LIAELDDMFD FNGELKGPKK EWMVVYTDNE 780 GDMMLVGDDP WIEFCDMVHK IFIYTREEVQ RMNPGTLNSR SEDSHANSME RGSVGREMRG 840 CLSTSSLNSE NC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 21 | 378 | 3 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 21 | 378 | 3 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 21 | 378 | 3 | 354 | Auxin response factor 1 |
4ldx_A | 1e-177 | 21 | 378 | 3 | 354 | Auxin response factor 1 |
4ldx_B | 1e-177 | 21 | 378 | 3 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10817 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982020 | 0.0 | ||||
Expression Atlas | F4MGC6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g32110.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g32110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ306306 | 0.0 | AJ306306.1 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617188.1 | 0.0 | auxin response factor 23 isoform X2 | ||||
Swissprot | Q2R3F5 | 0.0 | ARFW_ORYSJ; Auxin response factor 23 | ||||
TrEMBL | F4MGC6 | 0.0 | F4MGC6_ORYSJ; Auxin response factor | ||||
STRING | OMERI11G12320.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g32110.2 |
Entrez Gene | 4350610 |