PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g31380.1 | ||||||||
Common Name | OsJ_34016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 26253.9 Da PI: 6.5016 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.1 | 4.1e-07 | 10 | 49 | 8 | 48 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 hPt+ elv +yL +++ + +l+ e+i +v+++ ++Pwd+ LOC_Os11g31380.1 10 HPTEGELVFHYLYRRAVNMPLPS-EFICDVNVLPHNPWDIV 49 9********************99.89*************94 PP | |||||||
2 | NAM | 28.2 | 5.5e-09 | 51 | 97 | 87 | 128 |
NAM 87 gkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 g++k+v+ + + vg+++tL+fy g+++++e+t+W m+e+rl LOC_Os11g31380.1 51 GSEKPVYYNqgG--GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 97 667777776441..234455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.368 | 1 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-20 | 9 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-7 | 10 | 97 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MHLPAVGMSH PTEGELVFHY LYRRAVNMPL PSEFICDVNV LPHNPWDIVP GSEKPVYYNQ 60 GGGSDCMLVG MRRTLTFYFG NSRTAERTKW GMQEFRLAGN GLSPYPAMKH ATGDGSKPPC 120 NCAETTIAKR NDGLSAVLRN VLAVTPLVET VVEPDGSWLI CRIYRTRQRA LPVITPPAIE 180 NAREIIIPPA NGNAREAQVR FIDFLQQGSH IESSSPCSCI VGPSLAEGSD ESAGSVDQKD 240 * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9GAV6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g31380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g31380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940196 | 0.0 | FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 1e-82 | NAC transcription factor 25 | ||||
TrEMBL | B9GAV6 | 1e-180 | B9GAV6_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA11G0125900.1 | 1e-172 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 | Representative plant | OGRP12403 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 3e-13 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g31380.1 |