PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g31370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14458.6 Da PI: 8.1475 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.9 | 1.4e-08 | 11 | 65 | 32 | 86 |
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ++i+++di++++P d+ + +++++ +fF++++kk++ ++ +n a+ g+W+++ LOC_Os11g31370.1 11 DFITDIDILHHNPLDIVPTRQEKKNGKHFFTRKEKKHHGDNCRNHAAGVGFWRKS 65 679*************63445667799*********99999999999*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-10 | 6 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MAGPQMSLPY DFITDIDILH HNPLDIVPTR QEKKNGKHFF TRKEKKHHGD NCRNHAAGVG 60 FWRKSSFAES MEWAMQEFQL AGSYLLPCFV MRFATSDGTE QPFGCTRVTI ANMRHCILTP 120 YCCFIG* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2R3N1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g31370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g31370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136150 | 1e-104 | AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence. | |||
GenBank | AP014967 | 1e-104 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-104 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 5e-28 | NAC transcription factor 25 | ||||
TrEMBL | Q2R3N1 | 4e-92 | Q2R3N1_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA11G0125800.1 | 7e-92 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP52985 | 2 | 2 | Representative plant | OGRP12403 | 2 | 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g31370.1 |
Publications ? help Back to Top | |||
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