PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g31340.1 | ||||||||
Common Name | LOC9266935, Os11g0512100, OsJ_34014, OSNPB_110512100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 30334.2 Da PI: 6.5818 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.9 | 3.7e-31 | 19 | 141 | 9 | 128 |
NAM 9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....k 96 Pt+ +lvv+yL++++ ++++++ ++i++vdi++++Pwd+ ++++++ yfF++++++ ++++nra+ +g+W+ g++ ++++k + LOC_Os11g31340.1 19 PTNADLVVHYLHRRAIQEPVPC-DFITNVDILQHNPWDIV-PAEEKTNGKYFFIHEENERLGNHHSNRAAGDGFWRPVGSEVPIYHKrsggaD 109 9*********************.99**************5.455677899**********99************************9887777 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg+k+tLvf+ g+++++++t+Wvm+e+rl LOC_Os11g31340.1 110 EALVGMKRTLVFHYGNSSSAKRTEWVMQEFRL 141 777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.031 | 11 | 207 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.29E-30 | 18 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-15 | 19 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MASPGVCINL VNGTSTRLPT NADLVVHYLH RRAIQEPVPC DFITNVDILQ HNPWDIVPAE 60 EKTNGKYFFI HEENERLGNH HSNRAAGDGF WRPVGSEVPI YHKRSGGADE ALVGMKRTLV 120 FHYGNSSSAK RTEWVMQEFR LAGATLIPCP VTRPATGDGS MLPCHRTGTT IATENNGSPS 180 AGQTHGPLEK TMVEPDSSLR ICRIYKKRQR TPQFIIPPSI GDARELILAL PTIGNTREVA 240 LALPAIDFLG QPSFEEGSDV SADVITDDKD GYGHGMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-17 | 19 | 141 | 23 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.94265 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297728386 | 0.0 | ||||
Expression Atlas | Q2R3N4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g31340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g31340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242010 | 0.0 | AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence. | |||
GenBank | EU847001 | 0.0 | EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616648.1 | 0.0 | NAC transcription factor NAM-1 | ||||
TrEMBL | A0A0E0R8V2 | 0.0 | A0A0E0R8V2_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2R3N4 | 0.0 | Q2R3N4_ORYSJ; NAM protein | ||||
STRING | ORUFI11G15720.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS11T0512100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 | Representative plant | OGRP12403 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 7e-24 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g31340.1 |
Entrez Gene | 9266935 |
Publications ? help Back to Top | |||
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