PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g30484.1
Common NameLOC4350555, Os11g0498400, OSNPB_110498400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 307aa    MW: 34919.4 Da    PI: 9.0585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g30484.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033108130223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C ++++++ +L  Hi+  H
  LOC_Os11g30484.1 108 SCSVCWRVYPTSRLLSIHISEaH 130
                       6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.180105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082105IPR007087Zinc finger, C2H2
SMARTSM003557.4107130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
SMARTSM003550.29145170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQQKPAAEAM EEELKGEAVG PRRPGLGLWL AARRRLAPDD PFFAAGDMER ELLAKQVALD  60
LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH YRTRHTASCS VCWRVYPTSR  120
LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK  180
KARPSQRQRN KNQKQRQTVH KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH  240
SSCKEAKNNE MEVDKQVDEL ASAVSRLSTA DSTPSSISFG HRRSRGLAFV PRSIRQNKQV  300
SQTEPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511110.0callus| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329707200.0
Expression AtlasQ0ISL4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g30484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g30484
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615475.10.0zinc finger protein 511 isoform X2
TrEMBLA0A0E0BJB40.0A0A0E0BJB4_9ORYZ; Uncharacterized protein
TrEMBLB8BKM40.0B8BKM4_ORYSI; Uncharacterized protein
TrEMBLQ0ISL40.0Q0ISL4_ORYSJ; Os11g0498400 protein
STRINGOGLUM11G13870.10.0(Oryza glumipatula)
STRINGOS11T0498400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-82zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]