PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g25610.1 | ||||||||
Common Name | LOC4350427, Os11g0442900, OsJ_32680, OSNPB_110442900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 45813.8 Da PI: 5.3988 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k F ++ H+r+H LOC_Os11g25610.1 117 FACRICRKEFDTRKAVDGHMRVH 139 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.068 | 116 | 142 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.61E-6 | 116 | 139 | No hit | No description |
PROSITE profile | PS50157 | 10.325 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 221 | 235 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.39 | 222 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.75 | 222 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 224 | 246 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.61E-6 | 274 | 301 | No hit | No description |
PROSITE profile | PS50157 | 8.974 | 279 | 306 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0016 | 279 | 302 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.3 | 279 | 301 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 281 | 301 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001012 | developmental stage | G early unicellular microspore stage | ||||
PO:0001013 | developmental stage | H late unicellular microspore stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDEHH RRAVLPPRDN 60 GDGCAEHKRC RLDNAATAPA PSAGPVLTTS NGSAIVAIAS AAAAAAAAAS TMAREVFACR 120 ICRKEFDTRK AVDGHMRVHR QQSIATPKYN AADNSRVTVV AEPRTDLDLS GPHGSSSAPP 180 SPPAPANPPN HNQAVGHQPA AAAPNAGVVV VVEGAPQKSL PYMCKMQGCG RAFPTHQGLG 240 GHAAGHQNRS KAAAAAASEQ GSSGAGADGC HGGADSSKHR CRECGMEWKT GFALGGHMRK 300 HQTKETVTVN EKEPNVAGKH ISLGPPPLPD LTPAAAEVTS SEPLDQPPLL SMVVGAEVAA 360 PALLALANEA AALPPQDDQA EEEAAAEAAA PAEAAALRPV EAGAEAADVG AAPEEPLLAP 420 IAGMGTVRIF GFLVEKPAPG DGSGGEGSAP A* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996123 | 0.0 | ||||
Expression Atlas | Q53KY2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g25610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g25610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145367 | 0.0 | AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence. | |||
GenBank | AK110914 | 0.0 | AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616778.1 | 0.0 | myristoylated alanine-rich C-kinase substrate | ||||
TrEMBL | Q53KY2 | 0.0 | Q53KY2_ORYSJ; Os11g0442900 protein | ||||
STRING | OS11T0442900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17108 | 10 | 12 | Representative plant | OGRP10122 | 3 | 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g25610.1 |
Entrez Gene | 4350427 |
Publications ? help Back to Top | |||
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