PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g25560.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 509aa MW: 52391.5 Da PI: 8.131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g25560.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	327	381	11	55
HHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + + Ka +L + ++Y++sLq LOC_Os11g25560.1 327 VRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 381 6******************777877766664333333568888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.347	316	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-4	326	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-9	326	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-10	326	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.02E-7	328	385	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MAHDGFLGGG GGSFHAMAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGGGVHKA 60 ALMDELASRL GGVCGGGLGG GGVPSPPSSS RYASCYSTPV GSPCKPAPAP PVPSLLAAAD 120 AMIAERAARM SCLAAAGHGG GKLSRAASSQ SLLAETAAAG GVHQLPASDG SSSDAPCRKR 180 KAPCAKARGK DAATTIAKVL RLLSAPPLQS RRRTSPETMV NFPQSPEPGT KAKKCKLSAD 240 AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE PPKDYIHVRA RRGQATDSHS LAERVKAAGI 300 DAANHNFFFS SILAFADAIA AVFHLQVRRE KISERMKLLQ DLVPGCNKVA KFSQKINLNF 360 TLVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDQ ASDPIMPAPL 420 SLPPPPPPLS YSPEGASPGI CYASSQGTAM QSVVTSTKHL ETAPTFANHH VIPVPSLDGF 480 HSAHSQAGSC MWEDDLQSVV QMGFRGNT*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MAHDGFLGGG GGSFHAMAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGGGVHKA  60
ALMDELASRL GGVCGGGLGG GGVPSPPSSS RYASCYSTPV GSPCKPAPAP PVPSLLAAAD  120
AMIAERAARM SCLAAAGHGG GKLSRAASSQ SLLAETAAAG GVHQLPASDG SSSDAPCRKR  180
KAPCAKARGK DAATTIAKVL RLLSAPPLQS RRRTSPETMV NFPQSPEPGT KAKKCKLSAD  240
AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE PPKDYIHVRA RRGQATDSHS LAERVKAAGI  300
DAANHNFFFS SILAFADAIA AVFHLQVRRE KISERMKLLQ DLVPGCNKVA KFSQKINLNF  360
TLVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDQ ASDPIMPAPL  420
SLPPPPPPLS YSPEGASPGI CYASSQGTAM QSVVTSTKHL ETAPTFANHH VIPVPSLDGF  480
HSAHSQAGSC MWEDDLQSVV QMGFRGNT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.79525	0.0	leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2R5B7

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g25560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g25560

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146523	0.0	AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBank	AK288970	0.0	AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615632.1	0.0	transcription factor BHLH089-like isoform X1
TrEMBL	Q2R5B7	0.0	Q2R5B7_ORYSJ; Expressed protein
STRING	ORUFI11G12850.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13313	25	32
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g25560.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]