PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g19060.1 | ||||||||
Common Name | LOC4350315, Os11g0295900, OSNPB_110295900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 560aa MW: 59883.9 Da PI: 6.5133 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.9 | 2.4e-13 | 167 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + g ++ ++++ g ++ +e+Aa+a++ a++k++g LOC_Os11g19060.1 167 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVNAGGYDKEEKAARAYDLAALKYWG 226 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 269 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g LOC_Os11g19060.1 269 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 320 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-10 | 167 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-15 | 167 | 236 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.52E-19 | 167 | 236 | No hit | No description |
PROSITE profile | PS51032 | 17.57 | 168 | 234 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 168 | 235 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-25 | 168 | 240 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 169 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 269 | 320 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 269 | 330 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.91E-24 | 269 | 330 | No hit | No description |
PROSITE profile | PS51032 | 18.834 | 270 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 270 | 329 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-33 | 270 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 310 | 330 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ EWGSAYEGGG TVAAAGGEET AAPKLEDFLG 60 MQVQQETAAA AAGHGRGGSS SVVGLSMIKN WLRSQPPPAV VGGEDAMMAL AVSTSASPPV 120 DATVPACISP DGMGSKAADG GGAAEAAAAA AAQRMKAAMD TFGQRTSIYR GVTKHRWTGR 180 YEAHLWDNSC RREGQTRKGR QVNAGGYDKE EKAARAYDLA ALKYWGTTTT TNFPVSNYEK 240 ELDEMKHMNR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FGTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIIES SNLPIGTGTT RRLKDSSDHT 360 DNVMDINVNT EPNNVVSSHF TNGVGNYGSQ HYGYNGWSPI SMQPIPSQYA NGQPRAWLKQ 420 EQDSSVVTAA QNLHNLHHFS SLGYTHNFFQ QSDVPDVTGF VDAPSRSSDS YSFRYNGTNG 480 FHGLPGGISY AMPVATAVDQ GQGIHGYGED GVAGIDTTHD LYGSRNVYYL SEGSLLADVE 540 KEGDYGQSVG GNSWVLPTP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.88047 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297611665 | 0.0 | ||||
Expression Atlas | A0A0N7KSS8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g19060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g19060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287621 | 0.0 | AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876947.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-127 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A0N7KSS8 | 0.0 | A0A0N7KSS8_ORYSJ; Os11g0295900 protein | ||||
STRING | OS11T0295900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-118 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g19060.1 |
Entrez Gene | 4350315 |