PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g19030.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1244aa    MW: 139793 Da    PI: 7.6076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g19030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1354.5e-11787852174
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                       +fY++YA ++GF+++ks+++k         r+ +C++egk+ ++ ++  +++ +r+++++gCka +k++ ++dg
  LOC_Os11g19030.1 787 NFYQRYACHAGFDIKKSRMHKA-------FREVCCTREGKHVSKVNN-GDRQWRRPSKKMGCKAYVKLRHNYDG 852
                       6****************99998.......7899**********9999.88999****************99844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540015.89E-17593755No hitNo description
Gene3DG3DSA:3.30.310.1306.8E-4651744No hitNo description
PfamPF029022.3E-5651750IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF031011.3E-6787851IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.56810561092IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1244 aa     Download sequence    Send to blast
MEMTGKMPAR VKRIRFADSQ NECEVVLPQT LASGGASSSR AVGEATQSKP KRRRRATSAG  60
EGPSGDEPSE TKGPNLTRCS AALVVQACRA LSTVHHEKLE EIGLDAVAYK SLESLEQPDL  120
IQWLMDRTDP DTMCISIDDD RKIPITSRTV RLVLGTPLGG NDIVLPSHKV VRTVHESITD  180
ELGIHKKARL STKQLIEVIK SQKDDSRAVR YFIMVLMSKL LVPTTDVYVP KGDVWVASDL  240
DRVAAIDWSK AVFRALNDSI RCWCQNPASS IASCVIFLVV LYLDNILPPR DIGLDLTFTP  300
RIQMFTKDIV DKLVAADQEA SGDGTPPFGN LPRLGLLESL AEYDRQAKES ALEIERQFRL  360
VVDKQHMLCQ SVIDVLQANR AAQPPLVVPQ AAQCQEASRR QSDVQFTSAD INPNDSEDQQ  420
QQQHHGCNGS PSAFDQHTIH PNAPTHVSPS MEIVPYIPPV RLEVADQPHP GSAHSPDLTQ  480
RSPIPMDSAP LTSEEVSAQY SAPDTAEEPP AIEAGGVIGN VPGASTAIQT EDAPRAIDQE  540
SHGTEPKRFI QKPARFVSPV VVGPSIMPSD VSLSVQLRDF LLTNGGRMDS VKLLEIDSSV  600
AYGNDELKSF SNGNLTEWLF IDAFSSILFK DDMRNMPDTF GKRIFFPTSV SIIVPVLHHD  660
HWSLYAINIA HGRVDIMDSN NYNLIGTLES DHHCALSKRI IKRLSDALHE VAPKSFCRFG  720
GFRKNMMKCP KMQICSNDCA FYIMRFMEAY DGNRESIETL SIPGPSVPPH MVPTEGMAFP  780
TYDDAYNFYQ RYACHAGFDI KKSRMHKAFR EVCCTREGKH VSKVNNGDRQ WRRPSKKMGC  840
KAYVKLRHNY DGGALSSVVW HILNHHSDPL NTIFSRDAQI EPDMMLCINQ TYTPYEFETS  900
WDQFIKRYDL EGCPTMKALY DIRDKWVPAF SRKEYCGRMT STQRSESMNK LVKHKFVDHQ  960
TTLHRFARRM LEVITDRKEK EAAETRAWSG KPVLAVWWPF VIQMSRLYTR AAFRLFEDAL  1020
QDSTDFRITQ DDNFRNGWLV SHTKLSEKHN WCQKQFKLIA DVDEGVFTCE CKKWEHIGMF  1080
CTHMPWAFVH VQLEKIPAAY ILKRSRTKGR TRDPDEEVQI GAKGKKMCTR ECGWCHLRDG  1140
HYANTCPMNP TNFNKVMKAA NRGKGKRGRP RGSGRGRGRG TNAGCKVSTA VPRTTRRSTR  1200
EGPSLRRCLD NEWAEDAAES ARYTDDDQTN ADDDIGSYES DSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111701179RGSGRGRGRG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53MF0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g19030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g19030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365010.0AC136501.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0044M15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ53MF00.0Q53MF0_ORYSJ; Uncharacterized protein
STRINGORGLA11G0090200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142547
Representative plantOGRP929122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-27FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]