PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g17430.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1107aa MW: 126072 Da PI: 8.4225

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g17430.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.8	7.5e-18	414	494	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YA + GF +r +k++ + n++ t+r+ +Cs +gk++++k+ + r+gC a++k+++ k g w vtk++ HnH++ LOC_Os11g17430.1 414 NFYNVYAVSKGFGIRLNKERLN-VNKQRTMRQICCSHQGKNTNTKEP---------SVRIGCPAMIKINRLKgAGSWTVTKVVAAHNHPMK 494 6**************99998.77779*********997655.........9*********999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-13	414	494	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-33	590	683	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	874	910	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-7	885	912	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.5E-5	886	907	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence Send to blast
MKMKKFYQKA LDEAFAAVQE SSDADFKSDE DDDKGKNVVG VCFMARSVEE YSDDDNEVIP 60 TPSVEYLQEV IARLGYKISK FEKKISQHEV TIESLNAENS RIRSLISDDD ECKSCEVLFA 120 EIKSIRDVYS KKLDVESKKT RKFESCLALS FAMNTRLVDE LFLTKRALNK CQVALFASSM 180 FNLISSKRIK QYSTKPCLTC VANEMKLKDA LGRVKKQKGL LDACKNCATL TQEVSYLKSS 240 LQRFSDGKKN LNMILDQSKV IRMRDNSYTR NLSRRFKNNS WDSSTNKSLI LSQIIMDECN 300 PSFGIPDGDS IPHGVQTSPV AMEEDMSLTV GSHDSGHGTP VTRSVLPSLD WTEGNPAEKD 360 GAGIPMERLN EYNLFRMVVD NVDSSAAIPL EYADANILAP ALGQRFKTER DAFNFYNVYA 420 VSKGFGIRLN KERLNVNKQR TMRQICCSHQ GKNTNTKEPS VRIGCPAMIK INRLKGAGSW 480 TVTKVVAAHN HPMKKSIGVT KNYHSHNRID EGTRGIIEEM VDNSMSLTNM YGLLSSMHGG 540 ASMVPFMRKA MDRLAYAIRR DECSDDMQKN TKCPEGFAKK ELNYEHFGDV ITFDTTYKTN 600 RYNMPFAPFV GVNNHFQSTF FGCALLREET KESFAWLFET FKDCMNGKEP IGILTDNCPS 660 MAAAIRKVFP NTIHRVCKWH VLKKAKEFMG NIYSKRRSFK KAFHKVLTQT LTEDEFEAAW 720 HKLISDYQLE NNVYLRHIWD IRRKWAFVYF AHRFFAGMTT TQRSESANHV FKMFVKPSSS 780 MNGFVKRYDR FFNEKLQKDD SEEFQTSNDK VEIKTSSPIE IHASQVYTRA VFQLFSEELT 840 DSLSYMVKPG EDESTVQVVR MCTEESSSFL RKEYQVYYDV EREEFSCVCK MFEHKGILCS 900 HVLRVLVQYG LSKIPDRSYR HVMLNKKSVE VASVANKDVQ TFKMAMTVIN QLLEDMKSRL 960 SLDDDDNSGA APKRATIQIS RPTVLSEDGN EDVGAADVDS AYDMSSEEES GDNTGDVLPP 1020 VRKRSRGRPK VNRYKSSGEA ASMKRRKEVR SEKSKAANEG DSVEEENQDN DHADEMPFPR 1080 RFCHTCHQAG HNSRTCGRTS TYKRKF*

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence Send to blast

MKMKKFYQKA LDEAFAAVQE SSDADFKSDE DDDKGKNVVG VCFMARSVEE YSDDDNEVIP  60
TPSVEYLQEV IARLGYKISK FEKKISQHEV TIESLNAENS RIRSLISDDD ECKSCEVLFA  120
EIKSIRDVYS KKLDVESKKT RKFESCLALS FAMNTRLVDE LFLTKRALNK CQVALFASSM  180
FNLISSKRIK QYSTKPCLTC VANEMKLKDA LGRVKKQKGL LDACKNCATL TQEVSYLKSS  240
LQRFSDGKKN LNMILDQSKV IRMRDNSYTR NLSRRFKNNS WDSSTNKSLI LSQIIMDECN  300
PSFGIPDGDS IPHGVQTSPV AMEEDMSLTV GSHDSGHGTP VTRSVLPSLD WTEGNPAEKD  360
GAGIPMERLN EYNLFRMVVD NVDSSAAIPL EYADANILAP ALGQRFKTER DAFNFYNVYA  420
VSKGFGIRLN KERLNVNKQR TMRQICCSHQ GKNTNTKEPS VRIGCPAMIK INRLKGAGSW  480
TVTKVVAAHN HPMKKSIGVT KNYHSHNRID EGTRGIIEEM VDNSMSLTNM YGLLSSMHGG  540
ASMVPFMRKA MDRLAYAIRR DECSDDMQKN TKCPEGFAKK ELNYEHFGDV ITFDTTYKTN  600
RYNMPFAPFV GVNNHFQSTF FGCALLREET KESFAWLFET FKDCMNGKEP IGILTDNCPS  660
MAAAIRKVFP NTIHRVCKWH VLKKAKEFMG NIYSKRRSFK KAFHKVLTQT LTEDEFEAAW  720
HKLISDYQLE NNVYLRHIWD IRRKWAFVYF AHRFFAGMTT TQRSESANHV FKMFVKPSSS  780
MNGFVKRYDR FFNEKLQKDD SEEFQTSNDK VEIKTSSPIE IHASQVYTRA VFQLFSEELT  840
DSLSYMVKPG EDESTVQVVR MCTEESSSFL RKEYQVYYDV EREEFSCVCK MFEHKGILCS  900
HVLRVLVQYG LSKIPDRSYR HVMLNKKSVE VASVANKDVQ TFKMAMTVIN QLLEDMKSRL  960
SLDDDDNSGA APKRATIQIS RPTVLSEDGN EDVGAADVDS AYDMSSEEES GDNTGDVLPP  1020
VRKRSRGRPK VNRYKSSGEA ASMKRRKEVR SEKSKAANEG DSVEEENQDN DHADEMPFPR  1080
RFCHTCHQAG HNSRTCGRTS TYKRKF*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q53QA1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g17430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g17430

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC116368	0.0	AC116368.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0061D06, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880431.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	Q53QA1	0.0	Q53QA1_ORYSJ; Transposon protein, putative, unclassified
STRING	OS04T0354200-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-90	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os11g17430.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]