PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g16290.2

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 859aa MW: 94889.6 Da PI: 7.0227

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g16290.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ LOC_Os11g16290.2 532 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 582 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	535	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-23	751	846	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.6E-25	757	839	No hit	No description
Pfam	PF00564	9.1E-19	760	841	IPR000270	PB1 domain
SMART	SM00666	7.1E-26	760	842	IPR000270	PB1 domain
PROSITE profile	PS51745	27.157	760	842	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MDMLMLSSAL DGLDSYTDLV AGSSVADSIF SALTCFPPSQ ERLLHVSTPV GSNSRQDDSD 60 VSITKEGTTT RRGDCAAGLA SGEPVAAGIG SVPKPFDGVT LTERMLRALA MLKEASGGEA 120 ILVQVWMPVR NGEQHVLTTS DQPFLLDQKL TGYREVSRQF TFSAEEGPGL FPGLPGRVFM 180 SGMPEWTSNV MYYHGSEYLR VDYARRHEVR GSLAMPVFNS SGGSCCAVLE VVMTREKDNF 240 CLEMVNVSNA LQSVQLSTVN AWRHSQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 300 VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN 360 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL QSTYTKNDDY VLEFFLPVLC 420 KGGGEQQLLL DSISATMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 480 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 540 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 600 GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GQDVLHKLQN KQNGEINFDM DDGELFRNSH 660 STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDSFSAPQ EYRMESETDK 720 SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VVVKASYKND TIRFKLLPSM 780 KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ 840 DVVCPIGSSS GSCSMLRP*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MDMLMLSSAL DGLDSYTDLV AGSSVADSIF SALTCFPPSQ ERLLHVSTPV GSNSRQDDSD  60
VSITKEGTTT RRGDCAAGLA SGEPVAAGIG SVPKPFDGVT LTERMLRALA MLKEASGGEA  120
ILVQVWMPVR NGEQHVLTTS DQPFLLDQKL TGYREVSRQF TFSAEEGPGL FPGLPGRVFM  180
SGMPEWTSNV MYYHGSEYLR VDYARRHEVR GSLAMPVFNS SGGSCCAVLE VVMTREKDNF  240
CLEMVNVSNA LQSVQLSTVN AWRHSQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP  300
VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN  360
AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL QSTYTKNDDY VLEFFLPVLC  420
KGGGEQQLLL DSISATMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG  480
REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL  540
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE  600
GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GQDVLHKLQN KQNGEINFDM DDGELFRNSH  660
STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDSFSAPQ EYRMESETDK  720
SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VVVKASYKND TIRFKLLPSM  780
KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ  840
DVVCPIGSSS GSCSMLRP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.10084	0.0	callus\| flower\| leaf\| panicle\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32974877	0.0
Expression Atlas	Q2R7K5	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g16290.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g16290

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	Q2R7K5	0.0	Q2R7K5_ORYSJ; RWP-RK domain containing protein, expressed
STRING	ORGLA11G0080000.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-179	Nin-like family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g16290.2

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]