PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g15755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 649aa MW: 74181.8 Da PI: 9.3792 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.5 | 1.9e-12 | 87 | 134 | 1 | 49 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkte 49 +fYn+YA+++GFs+r+s+ ++ k+++ i++rtf+Cs+ g++ ++k++ + LOC_Os11g15755.1 87 DFYNAYARDMGFSIRRSSCHYVKDSTIIKNRTFCCSRAGTHGHDKRE-D 134 6****************************************999887.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-7 | 87 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-12 | 213 | 262 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.347 | 437 | 484 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.4E-6 | 458 | 481 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.5E-7 | 459 | 486 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MASLSNLPRS IKVTDSLHEQ VTTMSTEPAA SAETSVLHHP GTSFHGNLEG ELETDPSKIE 60 ATPQADPSKG KAPIIGMKFN SEQEAYDFYN AYARDMGFSI RRSSCHYVKD STIIKNRTFC 120 CSRAGTHGHD KREDQISNYE FLHEHNHILA TGSQALYLRS QRKITEAQMA SVENAKSVGI 180 SNKATIDLMA KEAGGYENLG FTREDMKNRL YSKRSLKTFL KAMSGKKPQT ILTGEDAAMA 240 KAIKLVMPES HHRICVWHMN QNACKHLAGV VKEYKKFNAD FQNCIYDKEE EDEFINAWNR 300 MLEKYDLQEN KWLERLFQKK VQWALVYGRN TFSADMSGTQ RSESMNNELK GYISVKYDIL 360 TFLEHFDRLL SDKRYEEVKN DFKTTQSTPW PKADLTILRQ ATRIYTPAIF KVFQEQVLQT 420 LNCDLYYCGD IDAKMVYKLK VHSKHHEHIV KFSPTEDKVR CSCKKFEFLG ILCCHALKIL 480 DVNNIKEIPK QYILQRWTID AKSLHIKSNC STQEDPKIKL STRRRDLCRM FVKIASRATE 540 SDETYLMAAN NAQKLAENVE KYLSIRPDQD LDKSGIEENV GLSKARGIKV KEKAIRGSRR 600 PIGGFDKATQ RSKKKKSDSN TSKCPVQAEV LDRLSRAVGL VRLQLLVW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g15755.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g15755 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877373.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | Q2R8S0 | 0.0 | Q2R8S0_ORYSJ; Transposon protein, putative, unclassified | ||||
STRING | Pavir.J09168.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14807 | 2 | 2 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-58 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g15755.1 |