PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g15210.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 459aa    MW: 49396.2 Da    PI: 4.6064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g15210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12243290355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++++ f  L++++P+        K++Ka+iL +++ Y+k+L+
  LOC_Os11g15210.1 243 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 290
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.7E-101351IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.339240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17243311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-14243294No hitNo description
PfamPF000104.0E-9244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16244301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-14246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MYDDNGAADL PTSQSASIKT IVCVPFIMHG VLELGTTDPV SEDPALVDRI TASLWDTPPR  60
AAFSSEAGVA DIVVFEDLDH GNTAVEATTT MVPGEPEPHA VAGGEVAECE SNAHNDLEQI  120
TMDDIGELYS LCEELDVLDD DSSSWVADPW SSFQLVPTAE ATDVDDAVVA ALGAIDGSCR  180
PSPSSFVAWK RTPDSDEVQA VPLISGEPPQ KLLKKAVAGA GAWMNNADGS AATMTTDQGS  240
SIKNHVMSER RRREKLKEMF LILKSVVPSI HKVDKASILA ETIAYLKELE KRVEELESSS  300
QPSPRPMETT RRRCCKSTGK KVSAGARAKR KAPAPEDTDG ERRHCVSNVN VTIMDNKELL  360
LELQCQWKEL LMTRVFDAIK GVSLDVLSVQ ASTSDGLLGL KIQAKVVVSA AKSSQQICSI  420
VYLSIYQSLY LRLFGVLILA ILLLHACSLP HLLPSNLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253ERRRRE
2249254RRRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53L62
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g15210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g15210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453640.0AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616671.10.0anthocyanin regulatory Lc protein
SwissprotP135264e-88ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLQ53L620.0Q53L62_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGOS11T0258700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-19bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  3. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  4. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  5. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]