PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g14020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 618aa MW: 69023.5 Da PI: 8.2353 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.3 | 1.5e-24 | 38 | 128 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v+++ +++w v++++l H+H+la LOC_Os11g14020.1 38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLA 128 9**************************************999988787999**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-23 | 38 | 128 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-17 | 220 | 311 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.769 | 500 | 536 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-6 | 511 | 538 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 4.9E-6 | 512 | 535 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI 60 DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVNRRP SSRWLVSRCV 120 LLHSHPLASS SSSADAAATD AAEPNDSSSA EQDGGAAAAA AALAPGGGVA QGLLDHFRKL 180 QLDNPAFCYA VQIDRSGCIA NFIWVDARAR SLYRRFGDAV VLDLTCRRNR RAVPFAAFTG 240 MNHHRQAIVF GCALMTDESE NSFAWLFETW LAFMGGKKPM SFTIGYSRDV EMAAMKVFGG 300 DVRHRFCRRD IFFICKQKLA SLYSEHSTLK DELKECVTEL ERIDEFESTW RMLLSKYNLF 360 GNEWLQTIYS IRHQWVPAYL KDSFFGEIIN APKLETMFKF FQRSSITTTT LRDIAFQFDK 420 AIARDYQTEL QEDFATFSSK PVMKSSHPME KQASELYTKV MFDLFQDELI ESSGFLVQNV 480 ESGDISRFEV TQSENANIRY TVLYSEPRAS VSCSCHKFEF AGVLCRHALR VLTAIGIPVL 540 PENYILKRWT RNAKNNILSQ VPANTKGSLA WRCNDLCRDG IRFAEEGATS EEIYKTAKEA 600 LQKAFAEILP QSEAHLK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98615 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53M07 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g14020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g14020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135459 | 0.0 | AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence. | |||
GenBank | AC138000 | 0.0 | AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615544.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 | ||||
Refseq | XP_025877014.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 | ||||
TrEMBL | Q53M07 | 0.0 | Q53M07_ORYSJ; Transposon protein, putative, unclassified | ||||
STRING | ORGLA11G0071600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 1e-116 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g14020.1 |
Publications ? help Back to Top | |||
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