PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g13840.1
Common NameOs11g0242300, OSNPB_110242300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 202aa    MW: 21647.3 Da    PI: 4.6476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g13840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-182069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  LOC_Os11g13840.1 20 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 69
                      69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-222077IPR016177DNA-binding domain
CDDcd000183.10E-292078No hitNo description
PROSITE profilePS5103223.672077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-312078IPR001471AP2/ERF domain
SMARTSM003801.5E-362083IPR001471AP2/ERF domain
PfamPF008478.2E-122169IPR001471AP2/ERF domain
PRINTSPR003672.6E-122132IPR001471AP2/ERF domain
PRINTSPR003672.6E-125979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEVVVMQNGG GGGGGEMAGQ YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ESPEMAAVAH  60
DVAALRLRGR DARLNFPAIA HRFRRPDTAE PGDVRAAALE AAAQVRFTPD LLVVAGGDDA  120
RRRCCSAGEA EAAAVAAAAW EWDVVVGGGG DELEAKSPNM WAELAEAMLM APPVWEGGGE  180
TDNDEWAQQA ASLWDPSVWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162077563ATERF1
3gcc_A2e-162077563ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53N79
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g13840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g13840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196710.0AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354600.0AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616190.21e-141ethylene-responsive transcription factor ERF022
TrEMBLQ53N791e-139Q53N79_ORYSJ; AP2 domain containing protein, expressed
STRINGOS11T0242300-001e-140(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-25ERF family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]