PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g12490.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1319aa MW: 146992 Da PI: 5.9705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g12490.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.6	1.7e-12	670	716	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn YA++vGFs++k+++++s++++ +t++tf+C++ g ++ +k LOC_Os11g12490.1 670 DFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRGGLSAVPYTK 716 6**************************************98766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56574	8.9E-87	24	417	IPR023796	Serpin domain
Gene3D	G3DSA:3.30.497.10	3.3E-56	29	193	No hit	No description
Pfam	PF00079	7.9E-81	30	417	IPR023796	Serpin domain
SMART	SM00093	3.0E-55	34	417	IPR023796	Serpin domain
Gene3D	G3DSA:2.30.39.10	2.0E-34	194	306	No hit	No description
Gene3D	G3DSA:3.30.497.10	3.3E-56	307	366	No hit	No description
Gene3D	G3DSA:2.30.39.10	2.0E-34	367	417	No hit	No description
Pfam	PF03101	1.5E-10	670	716	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-33	784	878	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.854	1069	1105	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	1071	1105	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.1E-6	1080	1107	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1319 aa Download sequence Send to blast
MASKTKASKR SRHDHGFAAV ARPPSCPGLT ELAIRLARRI PASAAGGGGN LVFSPLSVYA 60 ALALVAAGAA GDTLAELLGV LGVASYDELA GLVGRLAGKA LADLSGTGGP CVSFVSAVWH 120 DMARTLAPSF RAAAVLSFMA ETHAVDMRSR REAVGQINAW AKKATNELID SVIDGELPAD 180 ADVVVTNAVY FKGKWEEPFK KRLTITDKFH RLGAAAAVDA RFMRSTLPRH HIACHDGFKV 240 LRLPYEQGRR PPWSPPPSRF SMCVFLPDAR DGLWDLLDEI ASAPGLLQAA LPTKTVRVGK 300 FMLPKFKLTF SDDIAGVLRG LGLDVTFSDG VADFSKMVED DGGRRPLSMR SLVHKAVIEV 360 NEEGTEAAAV TGATLCLASA KRPRPVVVDF VADHPFAFFV IEETSGAVVF AGHVLDPSSK 420 PGALDDDDDD DVVDHRSTPG ASEEEDDGDD DMDYHVGMIG CLRQLWGCCC MPFVVGTETE 480 SNEDYGMLFR LSQEGGITYT NLIQQVSVSP NAILPGAEVA GGLPLLQNTY GSFMQLLQAT 540 IESEKSSADV DNQAEMCRPT VQLKASSVEV IYNEMQTQTI EADACFDQHF EQATEEDLLS 600 DHAIVTFQQV EEIEQDKSAE NLDKNFSEED INIFLENESV AVVQRGGQDA NSAHVPSINK 660 VFADENEAFD FYNGYAYMVG FSTCKASNYH SRKTDVVTRH TFKCNRGGLS AVPYTKKTVG 720 NYRDFVRRES GKNDMMQCLD FFEKKRSEDP LFYFRFRTDE NNVVKSLFWS DGNNRKFYEM 780 FDDIVSFDTM YKTNRYDLPF APFVGITSHG DNCLFGYAFL QDETSETFQW LFKTFLDCMG 840 GKVPATIITD QDLAMKAAIA IVFPDTVHRN CLFHMLSNAR DKTGRTFNSE DEEVYKDFHD 900 IVTKSQTEAE FEYLWKDLIR RNNLYNVRYF QLMWVTRKRW ALVYFKSNWC PLIQTTARSE 960 GTNSRYKADI CSSHSVSAFL AQYERIAKTI YECFKEQESL TRNTVLDAWS EYQFEKQAAK 1020 LYIRKIFWAF QRILQSYTKY DVTVNVRDSI FEVYKSEIHA LQDFRKRKYI VFVDTISEEY 1080 ECICSRFKKD GILCVHVLKV LIHLNITKLP EKYFIERWRL KDKNQELSVP NTLMSATVLE 1140 SNPLLRFNIL SQKMIKLASD ASKTKEKFIY VMNESDKIED GLKAMSDTAP NEATVHVQDA 1200 AATTCGVASV GAQTGTLMGP SGVGIDAEST KGAVAEIETT DMVGIASTSV LLDPKCSNSK 1260 GRHKSEPRKK RLINVIRSKG LVTCSGCGSH DHNIRTCPKK QEKPNATEVM KERKSREL*

Sequence ? help Back to Top

Protein Sequence Length: 1319 aa Download sequence Send to blast

MASKTKASKR SRHDHGFAAV ARPPSCPGLT ELAIRLARRI PASAAGGGGN LVFSPLSVYA  60
ALALVAAGAA GDTLAELLGV LGVASYDELA GLVGRLAGKA LADLSGTGGP CVSFVSAVWH  120
DMARTLAPSF RAAAVLSFMA ETHAVDMRSR REAVGQINAW AKKATNELID SVIDGELPAD  180
ADVVVTNAVY FKGKWEEPFK KRLTITDKFH RLGAAAAVDA RFMRSTLPRH HIACHDGFKV  240
LRLPYEQGRR PPWSPPPSRF SMCVFLPDAR DGLWDLLDEI ASAPGLLQAA LPTKTVRVGK  300
FMLPKFKLTF SDDIAGVLRG LGLDVTFSDG VADFSKMVED DGGRRPLSMR SLVHKAVIEV  360
NEEGTEAAAV TGATLCLASA KRPRPVVVDF VADHPFAFFV IEETSGAVVF AGHVLDPSSK  420
PGALDDDDDD DVVDHRSTPG ASEEEDDGDD DMDYHVGMIG CLRQLWGCCC MPFVVGTETE  480
SNEDYGMLFR LSQEGGITYT NLIQQVSVSP NAILPGAEVA GGLPLLQNTY GSFMQLLQAT  540
IESEKSSADV DNQAEMCRPT VQLKASSVEV IYNEMQTQTI EADACFDQHF EQATEEDLLS  600
DHAIVTFQQV EEIEQDKSAE NLDKNFSEED INIFLENESV AVVQRGGQDA NSAHVPSINK  660
VFADENEAFD FYNGYAYMVG FSTCKASNYH SRKTDVVTRH TFKCNRGGLS AVPYTKKTVG  720
NYRDFVRRES GKNDMMQCLD FFEKKRSEDP LFYFRFRTDE NNVVKSLFWS DGNNRKFYEM  780
FDDIVSFDTM YKTNRYDLPF APFVGITSHG DNCLFGYAFL QDETSETFQW LFKTFLDCMG  840
GKVPATIITD QDLAMKAAIA IVFPDTVHRN CLFHMLSNAR DKTGRTFNSE DEEVYKDFHD  900
IVTKSQTEAE FEYLWKDLIR RNNLYNVRYF QLMWVTRKRW ALVYFKSNWC PLIQTTARSE  960
GTNSRYKADI CSSHSVSAFL AQYERIAKTI YECFKEQESL TRNTVLDAWS EYQFEKQAAK  1020
LYIRKIFWAF QRILQSYTKY DVTVNVRDSI FEVYKSEIHA LQDFRKRKYI VFVDTISEEY  1080
ECICSRFKKD GILCVHVLKV LIHLNITKLP EKYFIERWRL KDKNQELSVP NTLMSATVLE  1140
SNPLLRFNIL SQKMIKLASD ASKTKEKFIY VMNESDKIED GLKAMSDTAP NEATVHVQDA  1200
AATTCGVASV GAQTGTLMGP SGVGIDAEST KGAVAEIETT DMVGIASTSV LLDPKCSNSK  1260
GRHKSEPRKK RLINVIRSKG LVTCSGCGSH DHNIRTCPKK QEKPNATEVM KERKSREL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3le2_A	4e-78	31	417	14	391	Serpin-ZX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	384	KRPRP
2	1261	1270	RHKSEPRKKR

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q53MC8

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g12490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g12490

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136971	0.0	AC136971.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0032K12, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642362.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	Q53MC8	0.0	Q53MC8_ORYSJ; Transposon protein, putative, unclassified

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-64	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os11g12490.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]