PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g12360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 2316aa MW: 264382 Da PI: 7.804 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.2 | 1.5e-11 | 8 | 42 | 7 | 41 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41 r vt+ +Rr+g++KK ELS+LC ++++++++ LOC_Os11g12360.1 8 AARRVTLRRRRAGLIKKVTELSILCSVQASIVVYN 42 5799****************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.115 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-4 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-14 | 3 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-11 | 5 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF13963 | 1.4E-22 | 170 | 242 | IPR029480 | Transposase-associated domain |
Pfam | PF02992 | 1.2E-104 | 462 | 685 | IPR004242 | Transposon, En/Spm-like |
Pfam | PF13960 | 4.2E-51 | 858 | 981 | IPR025452 | Domain of unknown function DUF4218 |
Pfam | PF13952 | 2.0E-23 | 1128 | 1194 | IPR025312 | Domain of unknown function DUF4216 |
SuperFamily | SSF54001 | 2.75E-36 | 2045 | 2282 | No hit | No description |
PROSITE profile | PS50600 | 9.733 | 2060 | 2243 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene3D | G3DSA:3.30.310.130 | 3.7E-8 | 2148 | 2238 | No hit | No description |
Pfam | PF02902 | 8.9E-8 | 2150 | 2261 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008234 | Molecular Function | cysteine-type peptidase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 2316 aa Download sequence Send to blast |
MARLTKNAAR RVTLRRRRAG LIKKVTELSI LCSVQASIVV YNIDEAGDPV VWPSIEEAKN 60 MWSKLMDMSE ATQKKWMQDS KTLLQQQIMK LNKKLDNLKA ENYKREITNI ISQIGGGHRK 120 NLNDLSPEMV KNVKREVAKL REAIRNRIIK LHAQVIEKCI DYIIFSMMDR QWMYVDRRSK 180 EFIDGVHYFL RVAEANRQRG FICCPCNKCK NQKEYSASRT IHFHLFESGF MPSYNCWTSH 240 GEQGVEMEEN EVEDDNIPDF AQYVGFEGNQ TGEEEIAADG NDVADDLGQM LQDAREDCES 300 EKEAHKLDKI LEDHRTSLYP GCEQGHKKLD TTLELLQWKA KNGVSDKAFG DLLKLVKNIL 360 PGGNKLPETT YEAKKIVCPL GLEVHKIHAC PNDCILYRGE EYENLEACPV CKALRYKIRR 420 DDPGEVDGQL TKKRIPAKVM WYLPIIPRLR RLFRNKGNAR MLRWHAEERQ QDGMLRHPAD 480 GSQWRNIDRK FKEFGKDARN IRFGLSTDGM NPFGEMSSGH STWPVTMCIY NLPPWLCMKR 540 KYIMMLIIIQ GPKQPGNDID VYLRPLVEDL KQLWKKEGVP VWDEDKQEEF NLRALLFVAI 600 NDWPALSNLS GQSNKGYKAC THCMDETEST YLKHCRKVVY MGHRRFLAAN HPVRKKGKHL 660 EHKADHRTKP KHRSRKTVFA MVKDLKVVFG KGPGSQHIES EDGHAAMWKK NSIFWELPYW 720 EFLDVRHAID VMHLTNNLCV NLLGFLGVYG KSKDTLEARN DLKHMEQRGD LHPEPKEKGS 780 HYLSPASYTL SKAEKESMFE CLESIKVPSG YSTNIKRIIS TKEKKFTNLK SHDCHVLMTQ 840 LLPVVIRGII PDNVRATITK LCAFMNAISQ KVIDPDRLEA LQNEVVQCLV SFELIFPPSF 900 FNIMTHLLCH LVKEIRILGP MYLHNMFPFE RYMGVLKKYV RTRARPEASI AKGYGTEEVI 960 EFCVEFIEDL RPIGVPESRH EGRLRGKGTL GRKAITTVDN NLFSKAHFTV LQHSSLVAPY 1020 IEEHLALVRA RNIGKSDAWI TRHHIDTFPA WLQQHLMGNE SINQQLAFLA RGPSGSIATF 1080 QGYEINGYTF YTRAQDMKST NQNSAVRVDA MGHNGTTATY YGAIEDIWEL DYGPLKVPLF 1140 RCQWVRLTGG GVMIDDSGMT TVDLNKVGYS DEPFVLANDV TQVFFVKDMS SKGKKGRGPD 1200 EPKRQVVLPG KRKIVGVEDK TDEDYDQLDG QPPFTVTIDP SILLSNEDTP YSRSDHKEGT 1260 IMADRDEEQI LYDTIAEGSS QYWNEEEGNE DPNQYLNEEG NVERDAEGNQ QGHVEWDVEG 1320 NQEEEASGSQ PSVGQKRARG QRGAAKKLEG RHIITEVEED GRPSAPAEAA KNYVRHSGWV 1380 VRDNVPVSTV YWRRTRARGD HESFVPDSEK EMLWTTMLET FTLPAGIEDK VKRWTLKKMA 1440 EQFQSFKGDL YQKYILKGQT PNFDTFPKLR DHWDEFVAYK TGEQGQAMME RNKENAAKKK 1500 YHHHLGSGGY SVAMPKWEQM EASLIERGIE PATANWPERS KFWYYAHGGT LNPADGSLVF 1560 GDQIREAARR LTDAVEASSQ GTFRPDRDRD ELTLALQTPE HPGRTRGKGV IPWKIGFKED 1620 IHTYRSRMRS KRDTEAKIAD LEFRVSSYEL NMQEEVARKV DERMAAHRSH DPQPTIPPAM 1680 VSPSGNRSSC ASTGQVGSQS MDAMQTQDES TCPVDDITQR TPCELHIPFK NLSIKVASGM 1740 AIPTDPSGTY HCRPIPAGYS KVEVKLVEGA YEDLELDYPG GDGETHLRDT CHAIILWRRR 1800 YIILPGRQAA SRAPSPPAPP SPPQDPAPSP PHAPPAPSPP QAPASTPPQD PAPTPPRAPT 1860 PTPPQAPLPA PSKSRAPPAP PPAHTRATKK AKVDAAKNKD PRYDCTQEEL DAYVASEVKR 1920 QFKPRSPEKK IPIDPSVRNF FRGMSASVKE AIKLSDYERT LKKASSGKSK PVPQLGEQPN 1980 QEIEPLVTGK EMTIEQFITD TGLTTDQLLG VAPIEKAEVK YMYELGKPLV KPELLQSLPT 2040 QMYKFHQLYM EMSATGREMI GARIRDTDFL QGDDILWINF RVIYELYQLD ALDVSIMSCW 2100 ILMEIQRARR RRVFDTGFID PRKVNVAMLD QYPQETEDNL VHLLKAQHYK TFILLPYNTE 2160 FHWVLLLFDL EACTVNVYDS MDKKESTFDK VFEVIDRAWY RFRHLVRGKW RERLRRKFKF 2220 PCAKQKQGTN LCGYYVCEYC HCLVYQIITT RELDFIHMRD NLTTHKEFIA AVQEQLMGFI 2280 NEEILDPKGE FYYDGNTIHR SLASELAATT TTSKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1626 | 1631 | RMRSKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.88652 | 0.0 | callus| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53Q24 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g12360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g12360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119670 | 0.0 | AC119670.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0007H22, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q53Q24 | 0.0 | Q53Q24_ORYSJ; Transposon protein, putative, CACTA, En/Spm sub-class |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 9e-11 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g12360.1 |
Publications ? help Back to Top | |||
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