PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g11600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 346aa MW: 37286.5 Da PI: 10.6382 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 76.6 | 4.5e-24 | 3 | 120 | 44 | 170 |
GRAS 44 yfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136 ++ + L+arla+++s++y++l +++ts +++ l+a+klf ++ + ++I++av+g++++Hi+D+++s+G+QWpaL+ L +R+ LOC_Os11g11600.1 3 HLENTLEARLAGTGSQMYQSLVAKRTS---TVDFLKAYKLFTAACCVK--------KTIYNAVAGKRKLHIVDYGLSYGFQWPALFFLLGTRE 84 56789****************999999...8************99664........6899********************************* PP GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAe 170 +gpp++R+Tg++ p++g ++++eetg+rL+ A+ LOC_Os11g11600.1 85 GGPPEVRMTGIDVPQPGfrPADQIEETGRRLSICAR 120 ****************9**************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.351 | 1 | 116 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-21 | 3 | 120 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSHLENTLEA RLAGTGSQMY QSLVAKRTST VDFLKAYKLF TAACCVKKTI YNAVAGKRKL 60 HIVDYGLSYG FQWPALFFLL GTREGGPPEV RMTGIDVPQP GFRPADQIEE TGRRLSICAR 120 APVRCAIQVP RHCRKVGDGR ERGHGQGQPE PQRCGAQQQP RHEASRVRPE APERAAGSCC 180 CRHRRAATAL STVVLDGLQI GLGISARCCL AGKQTSRSAP SSSPPRPSLH LHLHLRRRPP 240 PSSSRHAADD AALHPLSRRR DAYVERMGEG EVVDGIWPDG GGERRPAAAV LALHRSARHR 300 SACHSQTAAA LARCQPPASA GEKRRDATSA KPGKNTAEGP PVNGL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58650 | 1e-70 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53NZ7 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g11600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g11600 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133005 | 0.0 | AC133005.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0052C16, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q53NZ7 | 0.0 | Q53NZ7_ORYSJ; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 7e-33 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g11600.1 |
Publications ? help Back to Top | |||
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