PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g11220.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 678aa    MW: 77301.1 Da    PI: 8.6006
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g11220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.92.2e-2587180190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.....traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fYn+YA+++GFs+r+s+ ++ k+++ i++rtf+Cs+ g+r ++k++ ++ ++     +r+etr+ C+a++k+++++dg ++++++ +eHnH 
  LOC_Os11g11220.1  87 DFYNAYARDMGFSIRRSSYHYVKDSTIIKNRTFCCSRAGTRGHDKRE-DQISNygqcfSRPETRCMCRACMKISLRDDGLYCIYEFLHEHNHI 178
                       6******************************************9999.3433345556**********************************9 PP

              FAR1  89 la 90 
                       la
  LOC_Os11g11220.1 179 LA 180
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1887180IPR004330FAR1 DNA binding domain
PfamPF105511.7E-25255334IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASLSNLPRS IKVTDSLHEQ VTTMPTEPAA SAGTFVLHHP GTSFHGNLEG ELETDPSKIE  60
ATPQADPSKG KAPIIGMKFN SEQEAYDFYN AYARDMGFSI RRSSYHYVKD STIIKNRTFC  120
CSRAGTRGHD KREDQISNYG QCFSRPETRC MCRACMKISL RDDGLYCIYE FLHEHNHILA  180
TGSQALYLRS QRKITEAQMA SAENAKSVGI SNKATIDLMA KEAGGYENLG FTREDMKNIL  240
YSKRSLKRKL NDGRPFGLLV GVDNHKKSVV FGAALLYDET ADSFVWLFKT FLKAMSGKKP  300
QTILTDEDAA MAKAIKLVMP ESHHRICVWH MNQNACKHLA GVVKEYKKFN ADFQNCIYDK  360
EEEDEFINAW NRMLKKYDLQ ENKWLERLFQ KKEQWALVYG RNTFSADMSG TQRSESMNNE  420
LKGYISVKYD ILTFLEHFDR LLSDKRYEEV KNDFKTTQST PWPKVDLTIL RQATRIYTPA  480
IFKVFQEQVL QTLNCDLYYC GDIDAEMYKL KVHESDETYL MAANNAQKLA EDVEKYLSIR  540
PDPDLDKSGT EENVGPSKAR GIKVKEKAIR GSRRPIGGFD KATQWSKKKK SDSSTSKCPV  600
QAEVVTPSLP YTMMQIQGRS EIPTNYNHMQ MPDYYHVEGA SLLQSSGYFE LLNKVKGCSM  660
KRLHRHLIHI PIACLPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249KRSLKRKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2R8S0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g11220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g11220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379890.0AC137989.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0050G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.11e-158protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ2R8S00.0Q2R8S0_ORYSJ; Transposon protein, putative, unclassified
STRINGPavir.J15432.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-70FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]