PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g07460.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 481aa    MW: 49566.1 Da    PI: 8.5636
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g07460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.81.2e-481463022137
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 
                       ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+as+sss++aa++
  LOC_Os11g07460.1 146 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPF 238
                       789******************************************************************9999******************** PP

               TCP  94 aakskksqksaasalnlakesr....................akarararertrekmriknkln 137
                       ++ ++++q++ a++l ++++++                    a + +r+r+r++++ +++++++
  LOC_Os11g07460.1 239 HHLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 302
                       *******************9999********************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-37152261IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349152206IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG  120
GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT  180
RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH  240
LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS  300
RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG  360
AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH  420
EGQSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPVIYLN HENPIKVAEN  480
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.467820.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO209752500.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g07460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g07460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.10.0transcription factor PCF3
SwissprotQ53PH20.0PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0IYU10.0A0A0E0IYU1_ORYNI; Uncharacterized protein
STRINGONIVA11G04610.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-37TCP family protein