PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g06840.1 | ||||||||
Common Name | LOC4349886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 45345.9 Da PI: 8.9803 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.3e-06 | 194 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdC+++F +++L+ H +t H LOC_Os11g06840.1 194 FSCPDCDEVFVKPDSLELHRSTrH 217 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.349 | 194 | 222 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 217 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.73E-18 | 219 | 430 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.7E-11 | 221 | 429 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MEASAAKEKD KDGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS 60 ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA 120 SSSFNSVMTA ATSATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC 180 HSVLDPRTLA AVVFSCPDCD EVFVKPDSLE LHRSTRHAVS ELGADDTSRN IVEIIFQSSW 240 LKKNAPVCRI ERILKVQSSD KTIKRFEQHK EAVKEKARSA GDEAGRNPRC VADGNELLRF 300 HCTTFACSLG LAGGTALCCA SSSPPPLHCK LCSIIKDGFR VDGNGRITTM ATSGRAHDTA 360 EVSPDGEKRA MLVCRVVAGR VKKLHSSNSS EDHDCDSVSP CSEGVYSDLD ELFVFSPRAI 420 LPCFVVIYSG Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 98 | SGGGGGGDGGGGGS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996157 | 0.0 | ||||
Expression Atlas | Q53JG9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g06840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g06840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110948 | 0.0 | AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616600.1 | 0.0 | uncharacterized protein LOC4349886 | ||||
TrEMBL | Q53JG9 | 0.0 | Q53JG9_ORYSJ; Zinc finger, C2H2 type family protein, expressed | ||||
STRING | ORGLA11G0041200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 3e-79 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g06840.1 |
Entrez Gene | 4349886 |
Publications ? help Back to Top | |||
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