PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g06770.1 | ||||||||
Common Name | Os11g0168500, OSNPB_110168500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27261.2 Da PI: 6.9609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 73 | 122 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a++ a+++++g LOC_Os11g06770.1 73 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDDAALRFRG 122 8********.**********64....55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.9E-36 | 73 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 73 | 131 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 73 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 73 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.515 | 73 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-12 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-16 | 79 | 132 | No hit | No description |
PRINTS | PR00367 | 5.2E-12 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MTIFKMNHNI SLISFTIAFS TLFRLDFAEH AAAMAAGQYA PATSSAMASP REQASSPSSG 60 DAAGGGGGGG RKRYRGVRQR PWGKWAAEIR DPVKAARVWL GTFDTAEAAA RAYDDAALRF 120 RGCRAKLNFP EDAALLPPPP PPPAPAPAPP QSQGMVGVGE EYSEYARFLQ GAGEPPHFLE 180 QIMEDSPRPS TAAGASSSSS GQSSFPLFYS FAGHELGGNE ANLARPPESG GAGGDGGRGS 240 SPPVTWPGYG WGAPPPWDPS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 72 | 130 | 4 | 63 | ATERF1 |
3gcc_A | 1e-22 | 72 | 130 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 75 | GRKRYRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74485 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116631036 | 0.0 | ||||
Expression Atlas | A0A0P0XZC3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g06770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g06770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120527 | 0.0 | AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence. | |||
GenBank | AC147812 | 0.0 | AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617618.1 | 1e-161 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0P0XZC3 | 0.0 | A0A0P0XZC3_ORYSJ; Os11g0168500 protein | ||||
STRING | OS11T0168500-00 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 7e-24 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g06770.1 |