PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06010.1
Common NameLOC4349836, OsJ_33044
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 903aa    MW: 97983.5 Da    PI: 6.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747077441355
                       HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  LOC_Os11g06010.1 707 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 744
                       67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-306162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.493694743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-4707756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK  180
NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL  240
LKIAQLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL  300
LMNNISQLEY GDGAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF  360
DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER  420
GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN  480
MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD  540
VPESSIHADS APLFSSRDNE LYSGIFSLTD TDQLLDAVIS NVNPAGKQSS DDSASCKTSL  600
TDIPATSYLC SKEMKQCGSS GVPSVLIKNE SAQFIKQPCL AENAEDGCLS QNNGMHKSQI  660
RLWIESGQSM KCESASASNS KGLDTPSKAN RKRSRPGESP KPRPKDRQLI QDRIKELREM  720
VPNGAKCSID ALLEKTVKHM LFLQSVTKHA DKLKDSTESK ILGNENGPVW KDYFEGGATW  780
AFDVGSQSMT CPIIVEDLDR PRQMLVEMIC EDRGIFLEIA DFIKGLGLTI LRGAMEARKS  840
KIWARFTVEA NRDVTRMEIF LSLVRLLEPN CDSSGAAENA NNVNMPLGLV HQPVIPATGR  900
IQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.318830.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329917880.0
Expression AtlasQ2RAA8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0R4H50.0A0A0E0R4H5_ORYRU; Uncharacterized protein
TrEMBLQ2RAA80.0Q2RAA8_ORYSJ; Expressed protein
STRINGORUFI11G03710.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Representative plantOGRP152168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-54conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]