PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g05740.1 | ||||||||
Common Name | LOC4349821, Os11g0156000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 280aa MW: 30969.3 Da PI: 7.1951 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 90.4 | 1.4e-28 | 38 | 129 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g ++ l++ede g W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ LOC_Os11g05740.1 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129 99****************************9666678899************************************************7642 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-41 | 32 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-30 | 35 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.04E-27 | 37 | 131 | No hit | No description |
SMART | SM01019 | 1.3E-21 | 38 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 38 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-26 | 38 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD 120 VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS 180 TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL 240 DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPSYWGNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-50 | 33 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-50 | 33 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53019 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980511 | 0.0 | ||||
Expression Atlas | Q53QI0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g05740.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g05740 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070487 | 0.0 | AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615108.1 | 0.0 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 0.0 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | B8BJ68 | 0.0 | B8BJ68_ORYSI; Uncharacterized protein | ||||
STRING | OS11T0156000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 1e-53 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g05740.1 |
Entrez Gene | 4349821 |
Publications ? help Back to Top | |||
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