PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g05640.1 | ||||||||
Common Name | LOC4349815, Os11g0154900, OSNPB_110154900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 395aa MW: 41204 Da PI: 6.6304 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.4e-10 | 124 | 186 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++a +eL++kv+ L+++N+++kke + +e+ +lk + LOC_Os11g05640.1 124 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNETMKKEKDVVMQEYLSLKETN 186 89*********************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-12 | 124 | 188 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.1E-9 | 124 | 186 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.979 | 126 | 189 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-5 | 128 | 192 | No hit | No description |
SuperFamily | SSF57959 | 8.84E-7 | 128 | 184 | No hit | No description |
CDD | cd14702 | 2.54E-13 | 129 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSDHSSSDGQ RQCRRRGVGV DVELDAAMAL ADMAGAAPGQ PEASPPPHAT QEAAAAAVAK 60 GEQEDEAEMA STRLSLELGK VGIQSSPPCS SSSSAGHPAM QPAAAATAAP GYGPRPRHML 120 TEAEKEAKRL RRVLANRESA RQTILRRQAI RDELARKVAD LSSQNETMKK EKDVVMQEYL 180 SLKETNKQLK EQVAIRTIKK AAVAEPMDTA PPAQQQAETA AAVAPPTTAT PPSTAPQPSF 240 LYTAAPAGVA PVPYVWGSWP PCGPTGYEPP PPLCLPPCAW YYPVVADPRV SSPPTSTYPQ 300 SYQEQPTSSP GGGTAEEDTD DDPCSLTLAI DVDKRSAPGA GGSAAGAGQH ASISDREKAT 360 AAAEARKRRK ELTKLKQMHG GGGGSRPGGG GEHW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 365 | 370 | RKRRKE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764520 | 0.0 | ||||
Expression Atlas | A0A0N7KSG4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g05640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g05640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287905 | 0.0 | AK287905.1 Oryza sativa Japonica Group cDNA, clone: J065211O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615785.1 | 0.0 | uncharacterized protein LOC4349815 | ||||
TrEMBL | A0A0N7KSG4 | 0.0 | A0A0N7KSG4_ORYSJ; Os11g0154900 protein | ||||
STRING | OS11T0154900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 | Representative plant | OGRP4569 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19490.1 | 3e-17 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g05640.1 |
Entrez Gene | 4349815 |
Publications ? help Back to Top | |||
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