PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g05614.1
Common NameLOC4349814, Os11g0154500, OsJ_33009, OSNPB_110154500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 295aa    MW: 31246.9 Da    PI: 6.5128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g05614.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.82.3e-41181492128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L +    + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+  
  LOC_Os11g05614.1  18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAlageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 110
                       69***************************99***************84455333335569*******************************99 PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++
  LOC_Os11g05614.1 111 CVISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149
                       9998868889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-4515181IPR003441NAC domain
PROSITE profilePS5100546.09917182IPR003441NAC domain
PfamPF023659.4E-2319148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MATTRSGVGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP  60
SQLAALAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV  120
IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA MLHPMAPPRL RNELGVCRVY  180
ISTGTLRSFD RRPLDNQAAA PTQQQVMPSL TAAAAVNTNL CGGGGGVVFA GAQGDSSRDC  240
SSSSGSRELA GGADGSEDDA IDWNSLISSA TADDLGFNTV VGFDPSIVGS WPQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2961802163NO APICAL MERISTEM PROTEIN
1ut4_B3e-2961802163NO APICAL MERISTEM PROTEIN
1ut7_A3e-2961802163NO APICAL MERISTEM PROTEIN
1ut7_B3e-2961802163NO APICAL MERISTEM PROTEIN
4dul_A3e-2961802163NAC domain-containing protein 19
4dul_B3e-2961802163NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546230.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329914860.0
Expression AtlasQ53QG7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g05614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g05614
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099390.0AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615861.10.0NAC domain-containing protein 90
SwissprotQ9FMR31e-65NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0R4E10.0A0A0E0R4E1_ORYRU; Uncharacterized protein
TrEMBLQ53QG70.0Q53QG7_ORYSJ; NAC-domain containing protein 90, putative, expressed
STRINGORUFI11G03420.10.0(Oryza rufipogon)
STRINGOS11T0154500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.28e-65NAC domain containing protein 61
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]