PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g05340.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1186aa MW: 134883 Da PI: 9.5618

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g05340.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	3.9e-27	591	682	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+e GFsvrk++ ++ + +g i++r+f+Cs+eg+r+e + ++++r+++a tr+gCka++++k+ + +g+w+v +++++HnH+l+ LOC_Os11g05340.1 591 QFYNKYARERGFSVRKDYCRRDRFSGIIIHRRFTCSREGFRKELYMDvSNRSREPQALTRCGCKAQFEIKLYQkEGNWYVVRFVSKHNHPLC 682 6****************************************99987788999*************999***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50096	7.547	36	65	IPR000048	IQ motif, EF-hand binding site
Pfam	PF03101	1.9E-25	591	682	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.6E-37	804	898	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1186 aa Download sequence Send to blast
MAVATAAAGL DHAGSSRLDA EVSSPVAGSG GGGGGEDGAA TKLQKMYRSY RTRRKLADTA 60 VVVEELWWQA LDYARLSYST ISFHDPNPET VASRWSRVSI IASKVGQGLS RDAKARKLAF 120 QHWIEAIDPR HRYGHNLQCY YDVWCQSQAG QPFFYWLDIG EGKDVDLPEC PRAQLKKQCI 180 KYLGPQEREQ YEYIITKGKI IHKYSEEPLD TSQGSKWIFV MSTTKRLYAG KKEKGVFQHS 240 SFLAGGATIA AGRFTAENGV IKSIWAYSGH YKPSAENLSN FMNFLEENGV DLNNVSPITA 300 IIESNPPQLI LPQNMVLENK ASGSSSQVEG AEGDNAATEQ AKPTYQRTLS GGLQSPRATI 360 DVPRKAILER VKSKRESRSY QLGHKLSLKW STGAGPRIGC VKDYPMQLRM QALEMIETVV 420 AAVAVFPHPP SQRAAAAAGA SRVPAIASSP RGRRRIEGSG RRIEPPRPPS HRGFRPSPPP 480 PGVAYNSPPL ARHIGRRLHP APLAVASNRK TPASLGQLWN IDAAALAVST PSTAVHFLVE 540 AMHEVVTKVV ILIGRFTVLC AMEGGGSSIE EQEEYATIIG MKFPSELHGF QFYNKYARER 600 GFSVRKDYCR RDRFSGIIIH RRFTCSREGF RKELYMDVSN RSREPQALTR CGCKAQFEIK 660 LYQKEGNWYV VRFVSKHNHP LCKGDQVPFL RSHRRITPAE QAKMVELRDV GLHQHQVMDI 720 MERDHGGYEG TGFTSRDMYN FFVKLKKKRI KGGDADHVLK YMQARQKDDM EFYYDYEIDQ 780 AGCLKRLFWS DPQSRIDYDA FGDVVVFDST YRVNKYNLPF IPFVGVNHHG STVIFACAVV 840 SDERVETYEW VLRQFLTCMC QKHPKSVITD GDNAMRRAIL HVFPNSDHRL CTWHIEQNMA 900 RNLSPAMLSD FRTLVHSEFD EDEFERKWVE FKIKHKVSDD NKWLKRMYNL RKKWAATYTK 960 GRVFLSMKSN QRSESLNSKL HRLLDRKMSL VILVEHYEHC LSRIHHQEAE LDAKASQSVL 1020 SYLQLEAIPS FCIARRWTMQ AKSAFPSDRY GEVYTWSDQM ERYRQLRTVA SEAFFRCSMT 1080 EESTLKVMKM LDNLMLEDDC SANCDNFEIQ FGHVVRQSMR TDIESSEKVL DPELVVPKGA 1140 PTKRMRGFLE KRKRKLLSVH EDIRRLESEH GKLHEASTSQ VTNRI*

Sequence ? help Back to Top

Protein Sequence Length: 1186 aa Download sequence Send to blast

MAVATAAAGL DHAGSSRLDA EVSSPVAGSG GGGGGEDGAA TKLQKMYRSY RTRRKLADTA  60
VVVEELWWQA LDYARLSYST ISFHDPNPET VASRWSRVSI IASKVGQGLS RDAKARKLAF  120
QHWIEAIDPR HRYGHNLQCY YDVWCQSQAG QPFFYWLDIG EGKDVDLPEC PRAQLKKQCI  180
KYLGPQEREQ YEYIITKGKI IHKYSEEPLD TSQGSKWIFV MSTTKRLYAG KKEKGVFQHS  240
SFLAGGATIA AGRFTAENGV IKSIWAYSGH YKPSAENLSN FMNFLEENGV DLNNVSPITA  300
IIESNPPQLI LPQNMVLENK ASGSSSQVEG AEGDNAATEQ AKPTYQRTLS GGLQSPRATI  360
DVPRKAILER VKSKRESRSY QLGHKLSLKW STGAGPRIGC VKDYPMQLRM QALEMIETVV  420
AAVAVFPHPP SQRAAAAAGA SRVPAIASSP RGRRRIEGSG RRIEPPRPPS HRGFRPSPPP  480
PGVAYNSPPL ARHIGRRLHP APLAVASNRK TPASLGQLWN IDAAALAVST PSTAVHFLVE  540
AMHEVVTKVV ILIGRFTVLC AMEGGGSSIE EQEEYATIIG MKFPSELHGF QFYNKYARER  600
GFSVRKDYCR RDRFSGIIIH RRFTCSREGF RKELYMDVSN RSREPQALTR CGCKAQFEIK  660
LYQKEGNWYV VRFVSKHNHP LCKGDQVPFL RSHRRITPAE QAKMVELRDV GLHQHQVMDI  720
MERDHGGYEG TGFTSRDMYN FFVKLKKKRI KGGDADHVLK YMQARQKDDM EFYYDYEIDQ  780
AGCLKRLFWS DPQSRIDYDA FGDVVVFDST YRVNKYNLPF IPFVGVNHHG STVIFACAVV  840
SDERVETYEW VLRQFLTCMC QKHPKSVITD GDNAMRRAIL HVFPNSDHRL CTWHIEQNMA  900
RNLSPAMLSD FRTLVHSEFD EDEFERKWVE FKIKHKVSDD NKWLKRMYNL RKKWAATYTK  960
GRVFLSMKSN QRSESLNSKL HRLLDRKMSL VILVEHYEHC LSRIHHQEAE LDAKASQSVL  1020
SYLQLEAIPS FCIARRWTMQ AKSAFPSDRY GEVYTWSDQM ERYRQLRTVA SEAFFRCSMT  1080
EESTLKVMKM LDNLMLEDDC SANCDNFEIQ FGHVVRQSMR TDIESSEKVL DPELVVPKGA  1140
PTKRMRGFLE KRKRKLLSVH EDIRRLESEH GKLHEASTSQ VTNRI*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q53PZ5

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g05340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g05340

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC116949	0.0	AC116949.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence.
GenBank	AC120307	0.0	AC120307.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q53PZ5	0.0	Q53PZ5_ORYSJ; Transposon protein, putative, unclassified, expressed

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-85	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os11g05340.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]