PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g04960.1

Common Name

Os11g0146900, OsJ_32956, OSNPB_110146900

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 452aa MW: 50632.3 Da PI: 4.3665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g04960.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.9	6.2e-30	37	172	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkat 86 lppG++F Ptdeelv++yL+ k+eg++ + ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+ +++g W+at LOC_Os11g04960.1 37 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-HFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSAT 128 79***********************998.89**********8655553777*9998776642779999656666679** PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +++s+ +++ +g k++L++ +a+++e+ W mhey l LOC_Os11g04960.1 129 GSVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 172 ***9866655666*****9..5666669******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-34	30	189	IPR003441	NAC domain
PROSITE profile	PS51005	35.531	37	189	IPR003441	NAC domain
Pfam	PF02365	1.8E-18	38	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MNPTIENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE 60 GRDPPRHFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV 120 EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQMGQ 180 YVLCAIQLKQ TYEREEKARE EQKNDNKRNK KAARRKNMQQ QPTACQAQDE QQETAPTPGE 240 ETIVDPDQFM DIAHSMHMMF GGVDQDAPPF MPSLIAPCNN DDGMLQLQPL QLQNPNPAML 300 YSNQLEPSYI GDQSMFTPCC CDRNCISCRQ LQFYQQQQAE DGSVAFGEAD LYQQHDRALG 360 NTGVYPDNVW VDGNMADYAQ RQIYNDQDNG GVLMQGPEDS ATFPDNFLML DEMAAGSDDA 420 SGFDYEVDQS MAVVPHVADQ TVDDIMSSLL N*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MNPTIENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE  60
GRDPPRHFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV  120
EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQMGQ  180
YVLCAIQLKQ TYEREEKARE EQKNDNKRNK KAARRKNMQQ QPTACQAQDE QQETAPTPGE  240
ETIVDPDQFM DIAHSMHMMF GGVDQDAPPF MPSLIAPCNN DDGMLQLQPL QLQNPNPAML  300
YSNQLEPSYI GDQSMFTPCC CDRNCISCRQ LQFYQQQQAE DGSVAFGEAD LYQQHDRALG  360
NTGVYPDNVW VDGNMADYAQ RQIYNDQDNG GVLMQGPEDS ATFPDNFLML DEMAAGSDDA  420
SGFDYEVDQS MAVVPHVADQ TVDDIMSSLL N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-17	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-17	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-17	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-17	32	191	12	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-17	32	191	15	170	NAC domain-containing protein 19
3swm_B	4e-17	32	191	15	170	NAC domain-containing protein 19
3swm_C	4e-17	32	191	15	170	NAC domain-containing protein 19
3swm_D	4e-17	32	191	15	170	NAC domain-containing protein 19
3swp_A	4e-17	32	191	15	170	NAC domain-containing protein 19
3swp_B	4e-17	32	191	15	170	NAC domain-containing protein 19
3swp_C	4e-17	32	191	15	170	NAC domain-containing protein 19
3swp_D	4e-17	32	191	15	170	NAC domain-containing protein 19
4dul_A	4e-17	32	191	12	167	NAC domain-containing protein 19
4dul_B	4e-17	32	191	12	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2RAL8

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g04960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g04960

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123526	0.0	AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	BX000499	0.0	BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697555.1	2e-96	PREDICTED: putative NAC domain-containing protein 94
TrEMBL	Q2RAL8	0.0	Q2RAL8_ORYSJ; No apical meristem protein, expressed
STRING	ONIVA06G03680.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11556	21	37
Representative plant	OGRP12083	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-22	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	LOC_Os11g04960.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]