PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g04570.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 855aa    MW: 94267.7 Da    PI: 7.67
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g04570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.62.8e-5671350111345
              GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp... 198
                        vHi+D++ s  ++ QWp Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v  rle+l++++Lr      
  LOC_Os11g04570.1  71 VVHIVDLSCSaaHPWQWPKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqik 158
                       59*****8653389***************************....9**************************.799**********5444455 PP

              GRAS 199 .gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                        g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++ ++eq+adhn
  LOC_Os11g04570.1 159 fGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMLIMEQDADHN 251
                       5*******************************************************98666777778899*********************** PP

              GRAS 250 sesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                       +  F +rf e l+yy+alfd+++a ++++    +er  v+r++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  +a  
  LOC_Os11g04570.1 252 TLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVDRMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREAYV 344
                       **********************77654444456****************************************************99998876 PP

              GRAS 340 llrkvk 345
                          kv+
  LOC_Os11g04570.1 345 WQLKVQ 350
                       555555 PP
2GRAS354.31.9e-1084068432374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++   +l++al +s++s +    +  a++  ++v P+lk+
  LOC_Os11g04570.1 406 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLILGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 497
                       679*******************************9*****************************888887544.44446778899******** PP

              GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ 
  LOC_Os11g04570.1 498 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 585
                       ************************966899****************************....9**************************.799 PP

              GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll........................................................... 214
                       +l+++++++L     v++gEalaV++vlqlhrll                                                           
  LOC_Os11g04570.1 586 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaa 678
                       9**999998843335667*************************************************************************** PP

              GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                          +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegae
  LOC_Os11g04570.1 679 ataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAE 770
                       *98555555556999*********************************************999.68889************************ PP

              GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                       r+erhe++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  LOC_Os11g04570.1 771 RVERHERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 843
                       *****************************************8888****884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.0641359IPR005202Transcription factor GRAS
PfamPF035149.8E-5471350IPR005202Transcription factor GRAS
PROSITE profilePS5098550.331379820IPR005202Transcription factor GRAS
PfamPF035146.5E-106406843IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MSASLHRPAL ASLLQIEAGG CGVLGVFAPG PRLPCRGYHP CRSSSTLGSA SLTPRRWHIS  60
PPGLRIRDVL VVHIVDLSCS AAHPWQWPKL LDDFHGRPGG APELYLTVLH DDNDFLADMQ  120
SLLSKKAESL GVSFHFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN  180
LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI  240
MLIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV DRMILREEIK  300
NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EAYVWQLKVQ ADNLRLCCTD  360
RGMFQDDMLS SATSSPASSV YSPSPSPSNG SWVQELSHDQ QSVRLIGLLY QCAAEVSAGS  420
FDRANLCLEH ITQLASLDAP HALQRLAAVF ADALARKLLN LILGLSRALL SSANSADAHL  480
VPVARRHMFD VLPFLKLAYL TTNHAILEAM EGERFVHVVD FSGPAANPVQ WIALFHAFRG  540
RREGPPHLRI TAVHDSKEFL ANMAAVLSKE AEAFDIAFQF NAVEAKLDEM DFDALRHDLG  600
VRSGEALAVS VVLQLHRLLA VDDGRRHAAA GCLTPVQIIA RSSPRSFGEL LERELNTRLQ  660
LSPDASVVSS LSPHSPAAAT AAHPTTSTPK LGSFLSAVRS LSPKIMVMTE QEANHNGGAF  720
QERFDEALNY YASLFDCLQR SAAAAAERAR VERVLLGEEI RGVVACEGAE RVERHERARQ  780
WAARMEAAGM ERVGLSYSGA MEARKLLQSC GWAGPYEVRH DAGGHGFFFC WHKRPLYAVT  840
AWRPAASRRG HTRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2943584332375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575640.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904460.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g04570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g04570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514800.0AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.10.0scarecrow-like protein 3
TrEMBLQ2RAQ80.0Q2RAQ8_ORYSJ; GRAS family transcription factor containing protein, expressed
STRINGORGLA12G0021500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-97scarecrow-like 3