PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g04470.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 359aa    MW: 38932.3 Da    PI: 4.2699
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g04470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.69.3e-14171392126
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknra.........tksg 81 
                       p G+ F P+ e+l+ +yL++ ++g++ e+  ++++e+d+y ++P +L +   ++ ++ k+w   +       tg  ++ +            g
  LOC_Os11g04470.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPSEElRDIVREADVYGSDPATLTEahsAYGHDGKSWREKT-------TGASQQNIftisrrggfEGGG 102
                       89************************66515679999**********832222222333442222.......222222211222223336799 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                       +W+++ + + +        g ++ + +   rap  +ktdW+m+e 
  LOC_Os11g04470.1 103 TWHNSQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 139
                       ***9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-1614161IPR003441NAC domain
PROSITE profilePS5100517.32816161IPR003441NAC domain
PfamPF023651.5E-717138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPSEELRDIV READVYGSDP  60
ATLTEAHSAY GHDGKSWREK TTGASQQNIF TISRRGGFEG GGTWHNSQRR RVIEGYGDRQ  120
AFEYRAPGNK KTDWLMEEIA SNLPAAITDE GIMVICKVYL SPRAKEATAN EEERQETNVV  180
PGPKRLREAE ATGYDAPAPP QPDVGYSYSG GGETSQATAS MDYCCSTTTH TADDTANAAY  240
YHGDADAIKP DAYDGGDYGI GFNADGELVL CGNGHGGIGT QGQTPLAMQN TNGEMTLFSP  300
MNGYGVGFNE EVRQEPQVEG EVEMDNFFND LFVDFDGAGD LNPNPNGGGD SHGHILCE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2RAR9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g04470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g04470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.11e-63PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLQ2RAR90.0Q2RAR9_ORYSJ; Uncharacterized protein
STRINGOBART12G02170.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Representative plantOGRP1706023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.13e-10NAC domain containing protein 63
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]