PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g04400.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 550aa    MW: 59950.4 Da    PI: 4.7233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g04400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.53.7e-401993461148
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  +
  LOC_Os11g04400.1 199 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLERRLVASAEERASAMELLEAYQVFMAACCFKWV 290
                       689***************************************************9.99999999999999999******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvg 148
                       ++  aN aIl+a+eg +r+Hi+D++ + +GlQWp+Llq La+R++gpp++R  + +
  LOC_Os11g04400.1 291 AFTFANMAILRAAEGRNRLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEFRAVAAA 346
                       ************************86538*********************976655 PP
2GRAS139.53.4e-43339541177373
              GRAS 177 efnvlvakrledleleeL.rvkp..gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                       ef++++a r+e+++ e+   v+p  + a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++
  LOC_Os11g04400.1 339 EFRAVAAARWETVTAEDVvGVDPddEAAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFF 431
                       79999999*****99987577777455899**************98877779***************************************** PP

              GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                       salfd+l a+ p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++++++ ++++ +++ +r+ + +++ +ee+ g
  LOC_Os11g04400.1 432 SALFDMLGATTPEEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQAAVEGDVVEAVRRRVRRRHHEEFVIEEDAG 524
                       *******77777765499****************************************************************999******** PP

              GRAS 357 slvlgWkdrpLvsvSaW 373
                       +l++gWk+r L++ SaW
  LOC_Os11g04400.1 525 WLLQGWKGRILYAHSAW 541
                       ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.459173522IPR005202Transcription factor GRAS
PfamPF035141.2E-40339541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAGIAALANC QSDERSSSCG AALLEFMGPA APPSEAAAAA DDVVLPYISR ILMEEDIDDD  60
MFFCLYPDHP ALLEAQQPFA QILSSSSSIA GEVNSAPMED SAALMMQGSG NGRGRKGSKH  120
GGDELEAEVG RASKLMATPE EEEDDDDGVG EMLEKMMLNG DEDEAFHGET NAPRVPAEKK  180
CGKAARRRRR QAKGEVVDLR ELLMSCAQAV ASGNRRSAGE LLEQIKRHSS PTGDATERLA  240
HYFADGLEAR LAGAASLERR LVASAEERAS AMELLEAYQV FMAACCFKWV AFTFANMAIL  300
RAAEGRNRLH IVDYGGQYHG LQWPSLLQRL AEREGGPPEF RAVAAARWET VTAEDVVGVD  360
PDDEAAVVVN DVLSLGTLMD ESGVFDDPSP RDTVLGSIRD MRPAVFVQAV VNGAHGAPFF  420
PTRFREALFF FSALFDMLGA TTPEEGSHLR VVLERDVLRR AAVGVIAGEG AERVERPETY  480
RRWQARNRRA GLRQAAVEGD VVEAVRRRVR RRHHEEFVIE EDAGWLLQGW KGRILYAHSA  540
WVVAEDGAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2620654225378Protein SCARECROW
5b3h_D1e-2620654225378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.823820.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329830740.0
Expression AtlasQ2RAS6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g04400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g04400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAK0730510.0AK073051.1 Oryza sativa Japonica Group cDNA clone:J033000F22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLQ2RAS60.0Q2RAS6_ORYSJ; GRAS family transcription factor containing protein
STRINGORGLA11G0021800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-75SCARECROW-like 14
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]