PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g04360.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 428aa    MW: 46125.2 Da    PI: 6.8707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g04360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.49e-1326336129128
               NAM  29 eleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                       ++e++i ++d+y +eP+dL  k     +   e+    fF++ ++++ +++rk+r++ +g+W  + + k v++k g +vg  + + f     ++
  LOC_Os11g04360.1 263 DTEKFICRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKNKAGVKVGETQNFRFK----KD 348
                       4446799************843454222..2445779999999999****************8866.889999*************7....78 PP

               NAM 116 gektdWvmheyrl 128
                       g+ tdW+m+e + 
  LOC_Os11g04360.1 349 GSYTDWLMEEHHC 361
                       999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534741.84E-3021265IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.9E-4426264IPR029058Alpha/Beta hydrolase fold
PfamPF078592.9E-2996269IPR013094Alpha/beta hydrolase fold-3
PROSITE profilePS5100514.051232381IPR003441NAC domain
SuperFamilySSF1019412.22E-13266381IPR003441NAC domain
PfamPF023658.7E-5278360IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGVTVH DVATDHGVDV RLYLTTTAPA RRRPVLVHFH GGGFCLSHAA WSLCHRFYAR  120
LTVDLDVAGI VSVVLPLAPE HRLPAAIDAG HAALLWLRDV ASGGSDTIAH PAVERLCGAA  180
DFSRVFLIGD SAGGVLVHNV AARAGEAGAE ALDPIRLAGG VQLHPGFILP EKSPSELENP  240
PTPFMTQETV DKFVVLALPP TKDTEKFICR ADVYGSEPSD LAGKFAPVPR CEKGGRLFFT  300
SCKRHKGSST RKERTAGDGT WVRQNSKGVK NKAGVKVGET QNFRFKKDGS YTDWLMEEHH  360
CCRQQAVAGD EEPVICRMYV SPRAPPDSAA RQESAAFVQQ QPAPQVSEPP CDKKKRDDVA  420
EEAPAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A9e-226727053247CXE carboxylesterase
2o7v_A9e-226727053247CXE carboxylesterase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.758100.0root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2RAT0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g04360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g04360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.11e-164probable carboxylesterase 17
TrEMBLQ2RAT00.0Q2RAT0_ORYSJ; Cell death associated protein, putative
STRINGORGLA11G0021400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478
Representative plantOGRP9262314
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]