PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g03370.1
Common NameLOC4349650, Os11g0127600, OsJ_32787, OSNPB_110127600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 360aa    MW: 39688.5 Da    PI: 7.2499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g03370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51191581128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e++
  LOC_Os11g03370.1  19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIF 110
                       79*************************888.56***************99999**************************************** PP

               NAM  94 sk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +              +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  LOC_Os11g03370.1 111 NLqptsyggssnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 158
                       9888999888887766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5916185IPR003441NAC domain
PROSITE profilePS5100554.00319185IPR003441NAC domain
PfamPF023651.9E-2520158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF NLQPTSYGGS  120
SNNKNNKQLV GMKKTLVFYM GRAPKGTKTN WVMHEFRLHA NLHNDNPNLR LNLKDEWVVC  180
KVFHKKGDDR EAINKQQAQA AAVDQYSAGT PNNGSSVEAG DDDDDLFQLD SIIDPSIYFS  240
NSSAANILSA PPNMSNSVVA ANYGASTTTT GTASAGSFQQ QPNYCSLINK SISSSNVSSW  300
NNMPPPPPVA EGGVHGIGSS YSLQHQAAMV KALRDVIRLP NPLGMPQYKL DDAYLWDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501718615166NO APICAL MERISTEM PROTEIN
1ut4_B3e-501718615166NO APICAL MERISTEM PROTEIN
1ut7_A3e-501718615166NO APICAL MERISTEM PROTEIN
1ut7_B3e-501718615166NO APICAL MERISTEM PROTEIN
3swm_A4e-501718618169NAC domain-containing protein 19
3swm_B4e-501718618169NAC domain-containing protein 19
3swm_C4e-501718618169NAC domain-containing protein 19
3swm_D4e-501718618169NAC domain-containing protein 19
3swp_A4e-501718618169NAC domain-containing protein 19
3swp_B4e-501718618169NAC domain-containing protein 19
3swp_C4e-501718618169NAC domain-containing protein 19
3swp_D4e-501718618169NAC domain-containing protein 19
4dul_A3e-501718615166NAC domain-containing protein 19
4dul_B3e-501718615166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.353430.0callus| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2RB33
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots (PubMed:18813954, PubMed:19135985). Expressed at low levels in leaves, stems and panicles (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g03370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g03370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679220.0AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBankKP0331910.0KP033191.1 Oryza sativa cultivar Dong Jin NAC-related protein 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.10.0NAC domain-containing protein 45
SwissprotQ2RB330.0NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A2H4CLX60.0A0A2H4CLX6_ORYSJ; NAC transcription factor NAC45
STRINGOS11T0127600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-73Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  3. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]